FIG. 5.

Schematic representation of HM and truncated vif proteins identified in vivo from putative translation of proviral DNA sequences. Shaded bars indicate translated vif sequences, unshaded bars indicate untranslated vif sequences, and partially shaded bars indicate regions not sequenced. Red lines indicate unique polymorphisms from consensus that could not be attributed to the corresponding APOBEC3 enzyme, and blue lines indicate unique polymorphisms from consensus that could potentially be attributed to the corresponding APOBEC3 enzyme. Sequences are ordered by HM-3G, HM-3F, and NH in descending order according to the consolidated 3G score. Amino acids below the peptides indicate consensus, and amino acids above the peptides indicate amino acids unique to the individual peptide sequence.