TABLE 2.
BKV strains phylogenetically analyzed in this study
| Sequencea | Location | Isolate name; no. of samplesb | Illness; sample originc | Cell culture status/clone status | Reference or source | Accession no. |
|---|---|---|---|---|---|---|
| WG | United States | Dunlop | WA; urine | Yes/no | 36 | V01108 |
| United States | MM | WA; urine and brain | Yes/unknown | 46 | V01109 | |
| United States | PittVR; 10 | RT; urine | No/no | This study | This study | |
| United States | PittNP; 5 | RT; urine | No/no | This study | This study | |
| United States | PittVM; 5 | RT; urine | No/no | This study | This study | |
| United States | CAP; 9 | Capillary leak syndrome; muscle, heart | No/yes | 8 | AY628224, AY628226-AY628233 | |
| United States | HC; 3 | Healthy; urine | No/yes | 8 | AY628234-AY628236 | |
| West Africa | HI; 3 | HIV-2; urine | No/yes | 8 | AY628225, AY628237-AY628238 | |
| United Kingdom | AS | Pregnant; urine | Yes/yes | 44 | M23122 | |
| Japan | TW,THK; 6 | RT; urine | No/yes | 42 | AB217917-AB217921, AB213487 | |
| United States | UT | Solid tumor; urine | Yes/yes | GenBank | DQ305492 | |
| VP1 | England | IV | RT; urine | Yes/yes | 20 | Z19535 |
| England | GS | RT; urine | Yes/yes | 20 | Z19537 | |
| Japan | MT | SLE; urine | No/yes | 39 | X56911 | |
| Japan | KOM; 31 | BMT; urine | No/yes | 43 | AB181539-AB181569 | |
| Japan | THK, TW, TU; 29 | RT; urine | No/yes | 43 | AB181570-AB181598 | |
| The Netherlands | Dik | Acute tonsillitis; urine | Yes/yes | 40 | X56912 | |
| The Netherlands | JL | BMT; urine | Yes/yes | 40 | X56914 | |
| South Africa | WW | RT; urine | No/yes | 40 | X56913 | |
| Spain | BCN | Sewage | No/no | 3 | AF120244 | |
| Spain | BCNU | Pregnant; urine | No/no | 3 | AF120245 | |
| South Africa | PRETORIA1 | Sewage | No/no | 3 | AF120246 | |
| France | NANCY2 | Sewage | No/no | 3 | AF120247 | |
| VP1 | Unspecified | 160998 | Sewage | No/no | 4 | AF356534 |
| South Africa | SA17 | Sewage | No/no | 4 | AF356535 | |
| United States | USA3 | Sewage | No/no | 4 | AF356536 | |
| Unspecified | RA | Sewage | No/no | 4 | AF356537 | |
| Spain | BCN10 | Sewage | No/no | 4 | AF356543 | |
| England | SB | Lymphoma; urine | Yes/yes | 20 | Z19536 |
a
WG, whole genome of BK virus; VP1, major capsid protein of BK virus.
b
Original isolate names are preserved wherever applicable.
c
BMT, bone marrow transplant; CAP, capillary leak syndrome; RT, renal transplant; SLE, systemic lupus erythematous; WA, Wiskott-Aldrich syndrome.