TABLE 3.
Number of nucleotide differences in each gene
| Gene | Sequence length, in bp (n) | Total no. of nucleotide differencesa (d) | d/n (×100) | No. of nucleotide differences defining clustersb (c) | c/dc (×100) |
|---|---|---|---|---|---|
| Agno | 201 | 9 | 4.48 | 3 | 33.33 |
| VP2 | 1,056 | 90 | 8.52 | 30 | 33.33 |
| VP3 | 699 | 72 | 10.30 | 26 | 36.11 |
| VP1 | 1,089 | 151 | 13.86 | 52 | 34.44 |
| Large T | 2,089 | 238 | 11.39 | 110 | 46.22 |
| Small t | 518 | 40 | 7.72 | 20 | 50 |
| Total | 600 | 241 |
a
Total number of nucleotide differences in respective genes.
b
Number of nucleotide differences that distinguished the six clusters in the phylogenetic analysis of whole genomes.
c
Percentage of number of variable sites contributing to the six clusters in the respective genes.