TABLE 4.
GenBank accession no. | LCMV-cgPi signalb | Mock signalb | Signal ratio | P | Gene identityc |
---|---|---|---|---|---|
AW047653 | 206.3 | 6.2 | 33.27 | 0.000002 | UBP43 |
U43086 | 493.6 | 34.8 | 14.18 | 0.000001 | GARG-49 |
U43084 | 454 | 39.6 | 11.46 | 0.000001 | GARG-16 |
X56602 | 377.2 | 42.1 | 8.96 | 0.000001 | ISG15 |
D90146 | 122 | 16.6 | 7.35 | 0.000533 | MHCI Q8/9d |
M27134 | 176.3 | 24.9 | 7.08 | 0.000085 | MHCI K region locus 2 |
U06924 | 330.8 | 49.3 | 6.71 | 0.000001 | STAT1 |
X16202 | 892.1 | 195 | 4.57 | 0.000001 | MHCI Q4 |
U55060 | 234.2 | 57.2 | 4.09 | 0.000054 | β-Gal binding lectin |
X67809 | 892.2 | 233.1 | 3.83 | 0.000001 | Peptidylprolyl isomerase C-associated protein |
D63902 | 119.6 | 31.6 | 3.78 | 0.000004 | Zinc finger protein 147 |
U43085 | 121 | 33.1 | 3.66 | 0.000253 | GARG-39 |
U19119 | 193 | 55.2 | 3.50 | 0.000001 | LRG-47 |
AJ007972 | 265.7 | 76.3 | 3.48 | 0.000021 | GTPI |
X01838 | 3369.6 | 989.1 | 3.41 | 0.000001 | Beta-2 microglobulin |
U51992 | 502.5 | 157.2 | 3.20 | 0.000001 | IRF-9 |
L12367 | 34.6 | 215.1 | −6.22 | 0.000074 | Adenylyl cyclase-associated protein |
V00727 | 80.5 | 321.9 | −4.00 | 0.001304 | FBJ osteosarcoma oncogene |
Known host genes with altered expression in hippocampal tissue of LCMV-cgPi mice. Hippocampus tissue was pooled from age- and sex-matched LCMV-cgPi mice (n = 10) with virus titers of 104 to 105 PFU/ml and from control mice (Mock) (n = 10), and total RNAs were isolated and used for gene profiling studies using Affymetrix murine genomic DNA array U74Av2. Genes were identified as described for Table 3. Displayed are the known host genes that showed consistent regulation differences of >3-fold between LCMV-cgPi mice and controls. The mean fluorescence intensities for each probe set and the signal ratios with corresponding P values of changes are indicated.
Fluorescence units (intensity).
MHCI, major histocompatibility complex class I; β-Gal, β-galactosidase.