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A new class of prophages in P. putida. P. putida prophage 3 (center) is aligned with Y. enterocolitica T7-like virulent phage phiYe03-12 (top) and cyanophage P60. Genes with protein sequence similarities are linked by shading. Putative gene functions are indicated, as well as their attribution to T7 class I early (yellow), class II DNA metabolism (orange), and class III morphogenesis modules (blue).
