TABLE 1.
Nucleotide and amino acid homology of VP7 sequences of group A rotaviruses (G1 to G15 genotype-specific prototype strains) with three G12 strains
| VP7 genotype | Prototype strain | Homology (%)a with:
|
|||||
|---|---|---|---|---|---|---|---|
| ISO 1
|
ISO 2
|
ISO 5
|
|||||
| nt | aa | nt | aa | nt | aa | ||
| G1 | Wa | 75 | 77 | 75 | 77 | 75 | 77 |
| G2 | S2 | 72 | 75 | 72 | 76 | 73 | 76 |
| G3 | AU1 | 75 | 80 | 75 | 81 | 74 | 81 |
| G4 | ST3 | 72 | 75 | 72 | 75 | 73 | 75 |
| G5 | OSU | 75 | 79 | 75 | 79 | 75 | 79 |
| G6 | PA151 | 75 | 81 | 75 | 81 | 75 | 81 |
| G7 | Ty-1 | 65 | 67 | 65 | 67 | 66 | 68 |
| G8 | 69M | 72 | 77 | 73 | 78 | 72 | 78 |
| G9 | WI61 | 76 | 81 | 76 | 81 | 76 | 81 |
| G10 | Mc35 | 73 | 79 | 73 | 78 | 73 | 79 |
| G11 | YM | 73 | 80 | 73 | 80 | 74 | 80 |
| G13 | L338 | 75 | 78 | 75 | 78 | 75 | 78 |
| G14 | F123 | 74 | 79 | 75 | 79 | 75 | 79 |
| G15 | Hg18 | 70 | 73 | 70 | 73 | 71 | 73 |
| G12 | L26 | 90 | 92 | 90 | 92 | 90 | 92 |
| G12 | T152 | 97 | 98 | 97 | 98 | 97 | 98 |
| G12 | Se585 | 99 | 99 | 99 | 99 | 98 | 99 |
a
nt, nucleotide level; aa, amino acid level. Values ≥90% are in boldface.