Table 1.
SNP ID | Position | Distance to next SNP, bases | Nucleotide change | MAF |
Difference | χ2 | P | |
---|---|---|---|---|---|---|---|---|
Cases | Controls | |||||||
rs2834070* | 33307848 | — | T/G | 0.390 | 0.336 | 0.055 | 9.67 | 0.002 |
rs9978551* | 33310829 | 2,981 | G/C | 0.067 | 0.070 | −0.003 | 0.08 | 0.78 |
rs11701698* | 33314341 | 3,512 | C/A | 0.215 | 0.189 | 0.026 | 2.87 | 0.09 |
rs6517135† | 33317967 | 979 | G/A | 0.129 | 0.147 | −0.018 | 1.90 | 0.17 |
rs1005573† | 33319112 | 1,145 | G/A | Pooling | Failed | — | — | — |
rs762178* | 33319797 | 685 | T/C | 0.391 | 0.461 | −0.070 | 12.94 | 0.0003 |
rs1059004† | 33320859 | 1,062 | C/A | 0.425 | 0.500 | −0.076 | 16.31 | 0.0001 |
rs6517137* | 33321175 | 316 | G/A | 0.100 | 0.099 | 0.002 | 0.02 | 0.88 |
rs13046814† | 33321773 | 598 | G/T | 0.241 | 0.277 | −0.036 | 4.65 | 0.03 |
rs9653711† | 33322345 | 572 | C/G | 0.425 | 0.375 | 0.050 | 7.36 | 0.007 |
33322832 C→A† | 33322832 | 487 | A/C | 0.054 | 0.051 | 0.002 | 0.06 | 0.80 |
33322853 G→A† | 33322853 | 21 | A/G | Pooling | Failed | — | — | — |
rs11701762* | 33323622 | 769 | T/C | 0.137 | 0.116 | 0.021 | 3.06 | 0.08 |
rs881666* | 33325662 | 2,040 | C/G | 0.430 | 0.392 | 0.039 | 4.37 | 0.04 |
rs762237* | 33328573 | 2,911 | C/T | 0.384 | 0.367 | 0.017 | 0.87 | 0.35 |
rs2834072* | 33330860 | 2,287 | G/A | 0.485 | 0.483 | 0.002 | 0.08 | 0.78 |
Nucleotide change shows the minor allele first. MAF, minor allele frequency in pools of 648 subjects with schizophrenia and 712 controls; —, no data obtained.
*Phase I.
†Identified de novo.