TABLE 4.
Allele-specific expression
| Assay ID | Tissue | Affymetrix B/(B + M) | Fraction B73 allele in mix RNA | Fraction B73 allele in F1 RNA | Mix RNA not equal to 0.50 (p = 0.1) | F1 RNA not equal to 0.50 (p = 0.1) | Mix not equal to F1 (p = 0.1) | Statistical classification | Annotation |
|---|---|---|---|---|---|---|---|---|---|
| AI600944 | Sdlg | 0.669 | 0.699 | 0.676 | Yes | Yes | cis | Putative AT-hook DNA-binding protein | |
| AI600944 | Ear | 0.630 | 0.627 | 0.556 | Yes | Yes | cis | Putative AT-hook DNA-binding protein | |
| AW447861 | Embryo | 0.393 | 0.436 | 0.468 | Yes | cis | Unknown | ||
| AY103945 | Embryo | 0.460 | 0.458 | 0.443 | Yes | cis | Nucleic acid-binding protein | ||
| AY104517 | Embryo | 0.458 | 0.465 | 0.476 | Yes | Yes | cis | Acyl carrier protein | |
| AY105043 | Embryo | 0.393 | 0.317 | 0.328 | Yes | Yes | cis | Acetolactate synthase small subunit putative | |
| AY105204 | Embryo | 0.578 | 0.539 | 0.580 | Yes | Yes | cis | Transthyretin-like protein | |
| AY105560 | Sdlg | 0.429 | 0.398 | 0.437 | Yes | Yes | cis | Putative 24-kDa seed maturation protein | |
| AY105580 | Embryo | 0.649 | 0.727 | 0.663 | Yes | Yes | cis | Putative RNA-binding protein | |
| AY106286 | Sdlg | 0.583 | 0.571 | 0.581 | Yes | cis | Nucleolar protein | ||
| AY107073 | Embryo | 0.602 | 0.546 | 0.561 | Yes | cis | Unknown | ||
| AY107304 | Embryo | 0.617 | 0.578 | 0.578 | Yes | Yes | cis | RNA-binding protein | |
| AY107304 | Sdlg | 0.562 | 0.597 | 0.599 | Yes | Yes | cis | RNA-binding protein | |
| AY107489 | Embryo | 0.624 | 0.530 | 0.544 | Yes | Yes | cis | Unknown | |
| AY107489 | Sdlg | 0.405 | 0.403 | 0.392 | Yes | Yes | cis | Unknown | |
| AY107823 | Embryo | 0.651 | 0.652 | 0.683 | Yes | Yes | cis | Protein kinase | |
| AY109016 | Sdlg | 0.547 | 0.484 | 0.489 | Yes | Yes | cis | Protein phosphatase 2C putative | |
| AY111695 | Embryo | 0.394 | 0.414 | 0.401 | Yes | cis | Cytosolic factor-like protein | ||
| AI600944 | Embryo | 0.588 | 0.551 | 0.541 | Yes | Yes | Yes | cis and trans | Putative AT-hook DNA-binding protein |
| AY104377 | Sdlg | 0.418 | 0.447 | 0.465 | Yes | Yes | Yes | cis and trans | 20S proteasome alpha subunit |
| AY104686 | Embryo | 0.467 | 0.341 | 0.424 | Yes | Yes | Yes | cis and trans | RAB5A protein |
| AY104780 | Embryo | 0.341 | 0.216 | 0.350 | Yes | Yes | Yes | cis and trans | Lipid transfer protein |
| AY105505 | Sdlg | 0.843 | 0.864 | 0.798 | Yes | Yes | Yes | cis and trans | Vi polysaccharide export ATP-binding |
| AY105560 | Ear | 0.402 | 0.466 | 0.433 | Yes | Yes | cis and trans | Putative 24-kDa seed maturation protein | |
| AY105866 | Embryo | 0.394 | 0.315 | 0.259 | Yes | Yes | Yes | cis and trans | Zinc transporter |
| AY107012 | Embryo | 0.569 | 0.596 | 0.617 | Yes | Yes | Yes | cis and trans | Unknown |
| AY107437 | Embryo | 0.561 | 0.514 | 0.495 | Yes | Yes | Yes | cis and trans | Putative cytokinin inducible protein |
| AY107865 | Embryo | 0.255 | 0.253 | 0.333 | Yes | Yes | Yes | cis and trans | DNAJ heat-shock protein |
| AY110779 | Embryo | 0.345 | 0.366 | 0.447 | Yes | Yes | Yes | cis and trans | Putative receptor-like protein kinase |
| AY111813 | Embryo | 0.593 | 0.317 | 0.384 | Yes | Yes | Yes | cis and trans | Unknown |
| AY112185 | Embryo | 0.410 | 0.420 | 0.390 | Yes | Yes | Yes | cis and trans | Calcium-binding EF hand family protein |
| AY107012 | Sdlg | 0.431 | 0.496 | 0.497 | Not DE | Unknown | |||
| AY107073 | Sdlg | 0.599 | 0.481 | 0.506 | Not DE | Unknown | |||
| AY107437 | Sdlg | 0.407 | 0.447 | 0.475 | Not DE | Putative cytokinin inducible protein | |||
| AY106808 | Embryo | 0.397 | 0.446 | 0.522 | Yes | Yes | trans | PE-PGRS family protein |
Sdlg, seedling.