TABLE 1.
Mutations observed in the nth-1 and xpa-1 MA lines
| Chr. | Locus | Locus pos. | Mut. | Context | Line(s) | Cod. |
|---|---|---|---|---|---|---|
| nth-1 | ||||||
| I | ZK337 | 25,889 | A → G | TCACG → TCGCG | N-20 | EX (R: H → R) |
| I | ZK337 | 26,580 | T → C | TCTCT → TCCCT | N-24 | EX (R: L → P) |
| I | ZK337 | 25,984 | C → G | AACGT → AAGGT | N-34 | EX (R: R → G) |
| I | ZK337 | 25,648 | T → G | AGTGC → AGGGC | N-35 | EX (S) |
| II | C17G10 | 23,624 | T → C | GGTCT → GGCCT | N-46 | IG |
| II | C17G10 | 23,629 | T → C | TTTCC → TTCCC | N-46 | IG |
| II | M106 | 19,396 | A → G | TAAAG → TAGAG | N-06 | IG |
| II | M106 | 19,453 | A → C | CCAAA → CCCAA | N-08 | IG |
| V | W05B10 | 20,887 | +G | CTCT → CTGCT | N-04 | IG |
| X | F19C6 | 3,776 | T → C | CATTT → CACTT | N-49 | IN |
| X | F19C6 | 3,997 | T → G | TCTAA → TCGAA | N-08 | IN |
| X | C07A4 | 11,775 | G → A | ACGTT → ACATT | N-25 | IN |
| X | C07A4 | 11,638 | A → G | GGAGA → GGGGA | N-35 | EX (S) |
| X | F59F5 | 22,175 | A → C | AAATT → AACTT | N-24 | IN |
| X | F59F5 | 21,782 | +T | TACT → TATCT | N-41 | IN |
| xpa-1 | ||||||
| II | C17G10 | 24,313 | C → T | TTCAA → TTTAA | A-04 | IG |
| II | M106 | 19,445 | C → G | GGCGG → GGGGG | A-48 | IG |
| II | M106 | 19,440 | A → C | GGAGA → GGCGA | A-08 | IG |
| II | M106 | 19,481 | C → G | GCCAA → GCGAA | A-24 | IG |
| II | M106 | 19,554 | T → G | GGTGC → GGGGC | A-37 | IG |
| II | M106 | 19,557 | A → G | GCACA → GCGCA | A-37 | IG |
| II | Y48G9A | 119,086 | C → G | CCCAG → CCGAG | A-41 | IG |
| V | B0240 | 2,189 | (T)6 → (T)7 | TC(T)6CA → TC(T)7CA | A-46 | IN |
| V | B0240 | 2,447 | A → G | GGAGT → GGGGT | A-05 | IN |
| V | W05B10 | 21,606 | T → A | AGTGA → AGAGA | A-17 | IG |
| V | WO5B10 | 21,579 | G → A | ATGAA → ATAAA | A-35, A-46 | IG |
| V | Y113G7A | 4,758 | +C | CAAC → CACAC | A-41 | IG |
| X | R03E9 | 21,601 | −A | ATAGA → ATGA | A-16 | EX (FS) |
| X | R03E9 | 22,136 | (G)4 → (G)5 | GA(G)4CA → GA (G)5CA | A-43 | EX (FS) |
| X | R03E9 | 21,839 | +T | AGAT → AGTAT | A-50 | IN |
| X | F19C6 | 3,530 | T → C | TTTCC → TTCCC | A-32 | IN |
| X | F59F5 | 22,287 | T → A | ATTTG → ATATG | A-03 | EX (R: N → Y) |
| X | F59F5 | 22,421 | T → G | CATCG → CAGCG | A-03 | EX (R: H → P) |
| X | F59F5 | 21,815 | G → A | AAGTT → AAATT | A-28 | IN |
| X | F59F5 | 21,825 | T → G | AATAC → AAGAC | A-28 | IN |
| X | F59F5 | 21,785 | G → A | TTGTT → TTATT | A-31 | IN |
| X | F59F5 | 21,860 | (C)3 → (C)2 | AG(C)3AC → AG(C)2AC | A-13, A-21 | IN |
Chr. indicates the chromosome in which the mutation was found. Locus refers to the sequenced C. elegans cosmid or yeast artificial chromosome in which the mutation was found (PCR loci surveyed for mutation are named according to C. elegans cosmids, fosmids, and yeast artificial chromosomes; see supplemental Table 1 for details). Mut. refers to the observed mutation. Context provides information regarding the bases surrounding the observed mutation with respect to the (+) strand of C. elegans chromosomes. Line indicates the specific MA line in which the mutation was detected. Cod. refers to the coding context of the sequence in which the mutation was found: EX, exon, IG, intergenic, and IN, intron. For exon base substitution mutations, S indicates a silent base substitution and R indicates a replacement base substitution (amino acid change is indicated after R). EX (FS) denotes a mutation predicted to result in a frameshift in an open reading frame.