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. 2006 Sep;174(1):57–65. doi: 10.1534/genetics.106.059840

TABLE 1.

Mutations observed in the nth-1 and xpa-1 MA lines

Chr. Locus Locus pos. Mut. Context Line(s) Cod.
nth-1
I ZK337 25,889 A → G TCACG → TCGCG N-20 EX (R: H → R)
I ZK337 26,580 T → C TCTCT → TCCCT N-24 EX (R: L → P)
I ZK337 25,984 C → G AACGT → AAGGT N-34 EX (R: R → G)
I ZK337 25,648 T → G AGTGC → AGGGC N-35 EX (S)
II C17G10 23,624 T → C GGTCT → GGCCT N-46 IG
II C17G10 23,629 T → C TTTCC → TTCCC N-46 IG
II M106 19,396 A → G TAAAG → TAGAG N-06 IG
II M106 19,453 A → C CCAAA → CCCAA N-08 IG
V W05B10 20,887 +G CTCT → CTGCT N-04 IG
X F19C6 3,776 T → C CATTT → CACTT N-49 IN
X F19C6 3,997 T → G TCTAA → TCGAA N-08 IN
X C07A4 11,775 G → A ACGTT → ACATT N-25 IN
X C07A4 11,638 A → G GGAGA → GGGGA N-35 EX (S)
X F59F5 22,175 A → C AAATT → AACTT N-24 IN
X F59F5 21,782 +T TACT → TATCT N-41 IN
xpa-1
II C17G10 24,313 C → T TTCAA → TTTAA A-04 IG
II M106 19,445 C → G GGCGG → GGGGG A-48 IG
II M106 19,440 A → C GGAGA → GGCGA A-08 IG
II M106 19,481 C → G GCCAA → GCGAA A-24 IG
II M106 19,554 T → G GGTGC → GGGGC A-37 IG
II M106 19,557 A → G GCACA → GCGCA A-37 IG
II Y48G9A 119,086 C → G CCCAG → CCGAG A-41 IG
V B0240 2,189 (T)6 → (T)7 TC(T)6CA → TC(T)7CA A-46 IN
V B0240 2,447 A → G GGAGT → GGGGT A-05 IN
V W05B10 21,606 T → A AGTGA → AGAGA A-17 IG
V WO5B10 21,579 G → A ATGAA → ATAAA A-35, A-46 IG
V Y113G7A 4,758 +C CAAC → CACAC A-41 IG
X R03E9 21,601 −A ATAGA → ATGA A-16 EX (FS)
X R03E9 22,136 (G)4 → (G)5 GA(G)4CA → GA (G)5CA A-43 EX (FS)
X R03E9 21,839 +T AGAT → AGTAT A-50 IN
X F19C6 3,530 T → C TTTCC → TTCCC A-32 IN
X F59F5 22,287 T → A ATTTG → ATATG A-03 EX (R: N → Y)
X F59F5 22,421 T → G CATCG → CAGCG A-03 EX (R: H → P)
X F59F5 21,815 G → A AAGTT → AAATT A-28 IN
X F59F5 21,825 T → G AATAC → AAGAC A-28 IN
X F59F5 21,785 G → A TTGTT → TTATT A-31 IN
X F59F5 21,860 (C)3 → (C)2 AG(C)3AC → AG(C)2AC A-13, A-21 IN

Chr. indicates the chromosome in which the mutation was found. Locus refers to the sequenced C. elegans cosmid or yeast artificial chromosome in which the mutation was found (PCR loci surveyed for mutation are named according to C. elegans cosmids, fosmids, and yeast artificial chromosomes; see supplemental Table 1 for details). Mut. refers to the observed mutation. Context provides information regarding the bases surrounding the observed mutation with respect to the (+) strand of C. elegans chromosomes. Line indicates the specific MA line in which the mutation was detected. Cod. refers to the coding context of the sequence in which the mutation was found: EX, exon, IG, intergenic, and IN, intron. For exon base substitution mutations, S indicates a silent base substitution and R indicates a replacement base substitution (amino acid change is indicated after R). EX (FS) denotes a mutation predicted to result in a frameshift in an open reading frame.