TABLE 1.
Frameshift mutation probability
Repeats in coding DNAa | Repeats in essential coding DNAa | Mutation rateb
|
Mutation probability, generation 160c
|
|||
---|---|---|---|---|---|---|
Repeat | Wild type | MMR− | Wild type | MMR− | ||
≥10 A/T | 143 | 22 | 4.7 × 10−8 | 3.1 × 10−4 | 0.00033 | 0.89 |
≥10 G/C | 0 | 0 | 7.0 × 10−8 | 7.5 × 10−4 | 0.0 | 0.0 |
7 A/T | 2998 | 561d | 3.8 × 10−9 | 1.6 × 10−6 | 0.00068 | 0.25 |
7 G/C | 81 | 18 | 1.9 × 10−8 | 7.6 × 10−6 | 0.00011 | 0.043 |
Number of repeats in haploids (http://www.yeastgenome.org).
Rates of frameshifts (mutations per generation) within indicated repeats in wild-type and MMR null strains, taken or estimated from Tran et al. (1997) and Harfe and Jinks-Robertson (2000). Note that rates at specific loci may vary, depending on factors such as chromosomal location and sequence context (Harfe and Jinks-Robertson 2000; Hawk et al. 2005). The probability of incurring mutations in a given set of sequences within a given number of generations was calculated assuming a Poisson distribution, as one minus the probability of incurring no mutations, which was calculated as p(x = 0) = e−(μ)(no. of loci) (no. of generations), where μ is mutations per locus per generation.
Probability of incurring frameshift mutations within essential genes containing the indicated type of repeat.
Calculated on the basis of the percentage of genes in the genome that are essential (18.7%).