TABLE 3.

Comparison of PTHR1 haplotype frequencies estimated from different methods

Haplotypes	EM-Parent	EM-Sib	EM-Single	GH-Sib	GH-Family	FAMHAP-Sib
ACAAa	—	—	—	0.1839	0.0422	—
ACAG	0.0012	0.0016	0.0023	0.0088	0.0060	—
ACGAa	—	—	—	0.0035	0.0030	—
ACGG	0.5767	0.5834	0.5641	0.3993	0.5241	0.5915
ATAA	0.0023	0.0032	0.0023	0.0123	0.0075	—
ATAG	—	—	—	—	—	—
ATGA	0.0174	0.021	0.0253	0.0105	0.0286	0.0195
ATGG	0.0010	0.0016	0.0023	0.0070	0.0015	—
GCAA	0.0057	0.0064	0.0069	0.0070	0.0030	0.0061
GCAG	—	0.0016	0.0024	0.0018	—	—
GCGA	0.0011	0.0016	—	—	0.0030	—
GCGG	0.0058	0.0064	0.0023	0.0140	0.0045	—
GTAA	0.3806	0.3751	0.3829	0.1506	0.3102	0.3829
GTAG	0.0024	0.0016	0.0023	—	0.0090	—
GTGA	0.0034	0.0049	0.0046	0.0158	0.0136	—
GTGG	0.0023	0.0016	0.0023	0.1856	0.0437	—
Discrepancy	—	0.0121	0.0174	0.4178	0.1270	0.0196

See Table 1 legend for details.

^aThe underlined haplotypes likely do not exist in the samples.