TABLE 1.
SNP positions and relative allele frequencies for each SNP
SNP | Gene | Position | Alleles (rare in parentheses) | Frequency of rare allele |
---|---|---|---|---|
1 | CSN1S1 | Promoter | A (G) | 0.018 |
2 | CSN1S1 | Promoter | C (T) | 0.078 |
3 | CSN1S1 | Promoter | C (T) | 0.199 |
4 | CSN1S1 | Promoter | (A) G | 0.172 |
5 | CSN1S1 | Promoter | (A) G | 0.159 |
6 | CSN1S1 | Promoter | (A) G | 0.2 |
7 | CSN1S1 | Promoter | C (T) | 0.195 |
8 | CSN1S1 | Promoter | (A) G | 0.203 |
9 | CSN1S1 | Exon 4 | (C) T | 0.166 |
10 | CSN1S1 | Exon 4 | C (G) | 0.083 |
11 | CSN1S1 | Exon 9 | C (D) | 0.082 |
12 | CSN1S1 | Intron 9 | A (G) | 0.198 |
13 | CSN1S1 | Exon 10 | C (G) | 0.199 |
14 | CSN1S1 | Exon 12 | 1, 3, 6 | a |
15 | CSN1S1 | Exon 17 | C (T) | 0.111 |
16 | CSN2 | Exon 7 | (C) T | 0.090 |
17 | CSN2 | Promoter | A (G) | 0.082 |
18 | CSN2 | Promoter | (A) G | 0.010 |
19 | CSN2 | Promoter | A (G) | 0.105 |
20 | CSN2 | Promoter | (A) T | 0.101 |
21 | CSN2 | Promoter | C (T) | 0.101 |
22 | CSN1S2 | Exon 3 | (A) G | 0.017 |
23 | CSN1S2 | Exon 15 | C (T) | 0.167 |
24 | CSN1S2 | Intron 15 | C (G) | 0.001 |
25 | CSN1S2 | Intron 15 | C (T) | 0.258 |
26 | CSN1S2 | Exon 16 | A (T) | 0.271 |
27 | CSN3 | Promoter | A (G) | 0.500 |
28 | CSN3 | Promoter | (A) G | 0.480 |
29 | CSN3 | Promoter | (A) G | 0.017 |
30 | CSN3 | Promoter | (A) T | 0.467 |
31 | CSN3 | Promoter | (A) T | 0.488 |
32 | CSN3 | Promoter | C (G) | 0.478 |
33 | CSN3 | Promoter | (G) T | 0.425 |
34 | CSN3 | Promoter | G (T) | 0.491 |
35 | CSN3 | Promoter | A (G) | 0.070 |
36 | CSN3 | Promoter | (C) T | 0.226 |
37 | CSN3 | Promoter | G (T) | 0.227 |
38 | CSN3 | Promoter | A (G) | 0.157 |
39 | CSN3 | Promoter | (A) G | 0.067 |
Relative frequencies are 0.745, 0.111, and 0.144 for alleles 1, 3, and 6, respectively.