TABLE 1.
SNP positions and relative allele frequencies for each SNP
| SNP | Gene | Position | Alleles (rare in parentheses) | Frequency of rare allele |
|---|---|---|---|---|
| 1 | CSN1S1 | Promoter | A (G) | 0.018 |
| 2 | CSN1S1 | Promoter | C (T) | 0.078 |
| 3 | CSN1S1 | Promoter | C (T) | 0.199 |
| 4 | CSN1S1 | Promoter | (A) G | 0.172 |
| 5 | CSN1S1 | Promoter | (A) G | 0.159 |
| 6 | CSN1S1 | Promoter | (A) G | 0.2 |
| 7 | CSN1S1 | Promoter | C (T) | 0.195 |
| 8 | CSN1S1 | Promoter | (A) G | 0.203 |
| 9 | CSN1S1 | Exon 4 | (C) T | 0.166 |
| 10 | CSN1S1 | Exon 4 | C (G) | 0.083 |
| 11 | CSN1S1 | Exon 9 | C (D) | 0.082 |
| 12 | CSN1S1 | Intron 9 | A (G) | 0.198 |
| 13 | CSN1S1 | Exon 10 | C (G) | 0.199 |
| 14 | CSN1S1 | Exon 12 | 1, 3, 6 | a |
| 15 | CSN1S1 | Exon 17 | C (T) | 0.111 |
| 16 | CSN2 | Exon 7 | (C) T | 0.090 |
| 17 | CSN2 | Promoter | A (G) | 0.082 |
| 18 | CSN2 | Promoter | (A) G | 0.010 |
| 19 | CSN2 | Promoter | A (G) | 0.105 |
| 20 | CSN2 | Promoter | (A) T | 0.101 |
| 21 | CSN2 | Promoter | C (T) | 0.101 |
| 22 | CSN1S2 | Exon 3 | (A) G | 0.017 |
| 23 | CSN1S2 | Exon 15 | C (T) | 0.167 |
| 24 | CSN1S2 | Intron 15 | C (G) | 0.001 |
| 25 | CSN1S2 | Intron 15 | C (T) | 0.258 |
| 26 | CSN1S2 | Exon 16 | A (T) | 0.271 |
| 27 | CSN3 | Promoter | A (G) | 0.500 |
| 28 | CSN3 | Promoter | (A) G | 0.480 |
| 29 | CSN3 | Promoter | (A) G | 0.017 |
| 30 | CSN3 | Promoter | (A) T | 0.467 |
| 31 | CSN3 | Promoter | (A) T | 0.488 |
| 32 | CSN3 | Promoter | C (G) | 0.478 |
| 33 | CSN3 | Promoter | (G) T | 0.425 |
| 34 | CSN3 | Promoter | G (T) | 0.491 |
| 35 | CSN3 | Promoter | A (G) | 0.070 |
| 36 | CSN3 | Promoter | (C) T | 0.226 |
| 37 | CSN3 | Promoter | G (T) | 0.227 |
| 38 | CSN3 | Promoter | A (G) | 0.157 |
| 39 | CSN3 | Promoter | (A) G | 0.067 |
Relative frequencies are 0.745, 0.111, and 0.144 for alleles 1, 3, and 6, respectively.