Table 4.
Comparison of REGAL vs. Classification Trees.
| Classification Trees | REGAL | |||||
|---|---|---|---|---|---|---|
| Sensitivity | Specificity | Accuracy | Sensitivity | Specificity (PPV) | Accuracy | |
| A. thaliana | 0.65 | 0.89 | 0.71 | 0.91 | 0.85 (0.86) | 0.88 |
| B. napus | 0.63 | 0.89 | 0.69 | 0.89 | 0.81 (0.82) | 0.85 |
| O. sativa | 0.64 | 0.88 | 0.71 | 0.87 | 0.82 (0.81) | 0.84 |
| Overall | 0.64 | 0.89 | 0.70 | 0.89 | 0.83 (0.83) | 0.86 |
Performance measures for predicting RNA editing were compared to the results as reported for classification trees [8]. We report both specificity and PPV (in parentheses after specificity values). REGAL has higher accuracy and sensitivity than classification trees in all three mitochondrial genomes.