Table 3.
The genes selected by PART-BFCS and the genes having high correlation with them
| Accession no. | Gene name | Times of selection | Top 10 high correlation genes | |||||||||
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | |||
| NM_002415 | MIF | 9 | NIPSNAP1 NM_003634 (0.74) | DDT NM_001355 (0.73) | PORIMIN BG538627 (0.73) | NDUFA7 NM_005001 (0.71) | SNAP29 NM_004782 (0.71) | TSSC3 AF001294 (0.71) | MMP1 NM_002421 (0.71) | LSM1 NM_014462 (0.71) | DGCR14 L77566 (0.71) | MRPL20 NM_017971 (0.69) |
| AB032261 | SCD | 8 | SCD AA678241 (0.94) | SMAP1 NM_021940 (0.74) | SCD BC005807 (0.69) | NRBF-2 AA883074 (0.67) | INSIG1 NM_005542 (0.65) | FADS1 AL512760 (0.63) | VDAC2 L08666 (0.63) | GLUD1 NM_005271 (0.62) | TFG NM_006070 (0.62) | TFAP2A BF343007 (0.61) |
| NM_016332 | SEPX1 | 7 | SIAH2 U76248 (0.81) | WHSC1 BF111870 (0.73) | KIAA0220 AI424872 (0.73) | BAIAP3 AI799802 (0.71) | TBC1D1 AB029031 (0.70) | FARSLA AD000092 (0.70) | OPRS1 NM_005866 (0.70) | CTBP2 N23018 (0.70) | TCF3 AW062341 (0.69) | KCTD5 NM_018992 (0.68) |
| AL161999 | CYFIP2 | 5 | CRISPLD2 AL136861 (0.91) | NTF3 NM_002527 (0.90) | PRO1331 NM_030778 (0.89) | TNFSF11 AF053712 (0.88) | NTRK3 S76476 (0.87) | SLC24A3 NM_020689 (0.86) | KCNIP1 NM_014592 (0.86) | CP NM_000096 (0.86) | ARTN AF120274 (0.86) | KIAA0523 AB011095 (0.86) |
| AI218219 | HSPCB | 5 | HSPCB AF275719 (0.89) | HSP105B NM_006644 (0.84) | HSP105B BG403660 (0.82) | FOXG1B NM_005249 (0.81) | HSPD1 BE256479 (0.80) | TERA_ NM_021238 (0.80) | DNAJB1 BG537255 (0.79) | HSPE1 NM_002157 (0.79) | FXR1 AI990766 (0.79) | NXT2 AF201942 (0.78) |
| AI811298 | OSR2 | 5 | OAZ AW149417 (0.80) | FXYD1 NM_005031 (0.78) | FBLN2 NM_001998 (0.78) | PMP22 L03203 (0.73) | KIAA0763 AI652645 (0.73) | TEKNM_000459 (0.73) | KIAA0644 NM_014817 (0.72) | GAS7 BE439987 (0.71) | FLJ10159 NM_018013 (0.70) | WNT10B NM_003394 (0.69) |
| U67195 | TIMP3 | 5 | TIMP3 BF347089 (0.91) | TIMP3 AW338933 (0.90) | IL6ST AW242916 (0.88) | IL6ST NM_002184 (0.88) | IL6ST AB015706 (0.82) | HLA-DRB3 AA807056 (0.80) | TIMP3 NM_000362 (0.78) | IL6ST BE856546 (0.76) | HAS1 NM_001523 (0.74) | C6orf133 AB002347 (0.74) |
| NM_020122 | PCMF | 4 | NTPBP AB044661 (0.85) | MGC10882 BC004952 (0.80) | C16orf34 AK023154 (0.77) | FKBP4 NM_002014 (0.77) | PFDN2 NM_012394 (0.76) | FKBP4 AA894574 (0.75) | LDLR NM_000527 (0.75) | STIP1 BE886580 (0.74) | AHSA1 NM_012111 (0.74) | FXR1 NM_005087 (0.73) |
| NM_001998 | FBLN2 | 4 | GAS7 NM_005890 (0.86) | GAS7 BE439987 (0.86) | PMP22 L03203 (0.85) | BMP1 NM_006129 (0.79) | OSR2 AI811298 (0.78) | KIAA0644 NM_014817 (0.77) | FXYD1 NM_005031 (0.77) | WNT10B NM_003394 (0.74) | ZDHHC3 NM_016598 (0.73) | AHNAK BG287862 (0.73) |
| NM_005566 | LDHA | 4 | PLOD2 NM_000935 (0.74) | ALDOA AK026577 (0.72) | ADM NM_001124 (0.70) | PSMA1 NM_002786 (0.69) | ALDOA NM_000034 (0.68) | VDAC1 AL515918 (0.68) | QSCN6 NM_002826 (0.67) | PKM2 NM_002654 (0.67) | PSG3 BC005924 (0.67) | TCP11L1 NM_018393 (0.67) |
| NM_005756 | GPR64 | 3 | ADD3 NM_019903 (0.81) | ADD3 AI818488 (0.79) | SLC4A4 NM_003759 (0.79) | ADD3 AI763123 (0.79) | ADD3 BE545756 (0.78) | CRYAB AF007162 (0.78) | LRRC16 NM_017640 (0.77) | EYA2 U71207 (0.74) | HSPB2 NM_001541 (0.71) | SPRY1 BF508662 (0.71) |
| AL136663 | PLXNA1 | 2 | PCBP2 AW103422 (0.70) | MGC5566 NM_024049 (0.63) | CLIC5 NM_016929 (0.63) | SMAD3 NM_015400 (0.62) | PTPRB NM_002837 (0.62) | SMAD3 BF971416 (0.62) | ICAM2 AA126728 (0.62) | SEMA3G NM_020163 (0.61) | KIAA0417 AB007877 (0.61) | EXT1 NM_000127 (0.60) |
| AL136663 | ABR | 2 | RNMTL1 NM_018146 (0.72) | MFAP4 R72286 (0.62) | ABR AL136663 (0.61) | KIAA1085 AU160676 (0.61) | P2RX4 NM_002560 (0.61) | CYP2E AF182276 (0.60) | LOC51031 AF061730 (0.60) | ZNF212 NM_012256 (0.59) | GSPT2 NM_018094 (0.59) | IDUA NM_000203 (0.59) |
| AL527773 | RARRES2 | 2 | PANX1 NM_015368 (0.91) | CCT8 NM_006585 (0.89) | GART NM_000819 (0.88) | ASMTL Y15521 (0.87) | ASMTL AA669799 (0.87) | ASMTL BC002508 (0.87) | SERPINB7 NM_003784 (0.85) | SERPINB3 AB046400 (0.84) | SERPINB4 U19557 (0.83) | ATP5O NM_001697 (0.83) |
| NM_021106 | RGS3 | 2 | TDO2 NM_005651 (0.84) | MMP13 NM_002427 (0.81) | COL11A1 NM_001854 (0.80) | MMP9 NM_004994 (0.75) | COL11A1 J04177 (0.74) | CLECSF5 NM_013252 (0.72) | HBA2 T50399 (0.72) | SLC19A1 AF004354 (0.72) | MMP11 AI761713 (0.71) | MMP11 NM_005940 (0.71) |
| 13 additional genes | ||||||||||||
The left hand side of the table shows the genes selected by PART-BFCS and the right hand side shows the genes correlated with them. Parenthesized values indicate correlation coefficients.