Table 2.
Indels within intergenic regions.
| SSR | Nearest ORF | |||||||
| Isolate | Indel | Unit | Reference | Query | Near Promoter | Near Palindrome | Locus | Annotation |
| Lab Culture | 1 | TTGCCCGGCGA | 7 | 6 | yes | no | BMA1136 | Hypothetical protein |
| 2 | TTCGACGC | 29 | 28 | yes | no | BMA2062 | Hypothetical protein | |
| 3 | AGTCGGCA | 38 | 39 | no | no | BMA1136 | Hypothetical protein | |
| 4 | CGATTGCCCGG | 7 | 8 | yes | no | BMA1138 | ABC transporter, putative | |
| 5 | GGGGCTTC | 9 | 8 | no | no | BMA2063 | Transcriptional regulator | |
| 6 | TGCGCGA | 19 | 15 | no | no | BMA2374 | THUMP domain protein | |
| 7 | No (-G) | NA | NA | yes | no | BMAA0389 | Hypothetical protein | |
| 8 | CTGTCGTG | 21 | 22 | no | no | BMAA0376 | Transporter | |
| 9 | GTGCGAT | 19 | 20 | no | no | BMAA1878 | Transcriptional regulator | |
| Mouse Spleen | 1 | GAGGCGT | 26 | 25 | no | no | BMA2774 | Secretory path protein |
| 2 | No (+TT) | NA | NA | yes | no | BMA1596 | Acetyltransferase | |
| 3 | CGCGAGG | 23 | 22 | yes | no | BMAA0247 | Oxidoreductase | |
| 4 | GTGGCGA | 7 | 6 | no | no | BMAA0375 | Transcriptional regulator | |
| 5 | AAGTTCCG | 3 | 4 | yes | no | BMAA0242 | Acyl-CoA dehydrogenase | |
| 6 | CTGTCGTG | 21 | 22 | no | no | BMAA0376 | Transporter | |
| 7 | TGGCGTT | 26 | 27 | yes | no | BMAA0242 | Acyl-CoA dehydrogenase | |
| 8 | GAAAGAGAC | 10 | 11 | yes | no | BMAA0815 | DNA-binding regulator | |
| Horse Lung | 1 | GTGAGCC | 13 | 14 | no | no | BMA0984 | Hypothetical protein |
| 2 | No (-C) | NA | NA | no | yes | BMAA1128 | ABC Transporter | |
| 3 | GGGAAACGCGAAAC | 6 | 5 | yes | no | BMAA1873 | Hypothetical protein | |
| 4 | No (-C) | NA | NA | no | yes | BMAA1868 | Aconitate hydratase | |
| 5 | No (+C) | NA | NA | no | yes | BMAA1420 | Synthetase protein | |
| 6 | No (+T) | NA | NA | no | yes | BMAA1237 | Carboxyvinyltransferase | |
| 7 | GCGAAAC | 5 | 6 | no | yes | BMAA1872 | Chemotaxis protein | |
| 8 | GATGAGC | 19 | 20 | no | yes | BMAA0612 | Signal sequence protein | |
| Human Liver | 1 | GGCAAGTC | 38 | 40 | no | yes | BMA1135 | Drug resistance transporter |
| 2 | No (-C) | NA | NA | no | yes | BMAA1868 | Aconitate hydratase | |
| 3 | GTGCTGTC | 21 | 22 | no | yes | BMAA0375 | Transcriptional regulator | |
| Human Blood | 1 | TTGGCGC | 111 | 109 | no | no | BMAA1866 | Conserved hypothetical protein |
| 2 | AAGCAGC | 42 | 40 | no | yes | BMAA0117 | 6-phosphofructokinase (pfk) | |
| 3 | GTGCTGTC | 21 | 22 | no | yes | BMAA0375 | Transcriptional regulator | |
| 4 | No (-C) | NA | NA | no | yes | BMAA1128 | ABC transporter | |
| 5 | No (-C) | NA | NA | no | yes | BMAA1868 | Aconitate hydratase | |
NA: Not applicable.