Table 1.
Mycelium up-regulated genes identified by in silico ESTs subtraction and cDNA microarray.
| PbAEST | Acession Numbers (GenBank) | Annotated function | Number of reads | P-valuea | Fold change | Accession Number/Best-hit organism/E-value | Functional categories | |
| M | Y | |||||||
| 202 | CA582032 | 1,3-beta-glucosidase* | 7 | 2 | 0.036942 | 12.3 | AAL09828.1/C. immitis/1.0E-132 | Control of cell organization: Cell wall and membrane |
| 2155 | CA582352 | Peroxisomal membrane protein PEX16 (peroxin-16) | 7 | 0 | 0.004174 | 1.4 | EAL88469.1/A. fumigatus/3.0E-64 | |
| 186 | CA583085 | HEX* | 13 | 8 | 0.049272 | 3.4 | EAL91716.1/A. fumigatus/3.0E-66 | |
| 2496 | CA583518 | Iron-sulphur cluster nifU-like protein* | 5 | 1 | 0.048854 | 1.7 | EAL90111.1/A. fumigatus/8.0E-58 | Ion transport |
| 4179 | CN245816 | Potassium transporter protein* | 0 | 1 | -b | 5.2 | CAA08814.1/N. crassa/4.0E-22 | |
| 1420 | CN247275 | U1 small nuclear ribonucleoprotein | 9 | 1 | 0.00526 | 1.6 | EAL91268.1/A. fumigatus/1.0E-60 | Transcription |
| 1029 | CA582332 | Methyltransferase | 32 | 1 | 0.000000 | 2.1 | EAL84975.1/A. fumigatus/1.0E-56 | Others |
| 2096 | CA581148 | Unkown | 20 | 1 | 0.000006 | 5.6 | - | |
| 514 | CA583322 | Unkown | 15 | 1 | 0.000138 | 23.4 | - | |
| 1045 | CA581951 | Unkown | 13 | 2 | 0.001769 | 24 | - | |
| 1178 | CN247241 | Unkown | 10 | 0 | 0.000535 | 8.5 | - | |
| 1664 | CN247289 | Unkown | 10 | 3 | 0.018648 | 2.5 | - | |
a FDR = 4,8% and Q-value < 5%.
b Not significant by Audic-Claverie's method.
* Up-regulated genes confirmed by northern blotting.
** Not assayed by cDNA microarray but confirmed as up-regulated in mycelium by northern blotting.