Table 3.
Model | Pure familial correlation, i.e. polygenic | Pure major gene (Mendel) | Mendel + familial correlation (mixed codominant) | A Dominant, μAB = μAA | A Recessive, i.e. B Dominant, μAB = μBB | Unrestricted, general | ||||||
Parameter | S.E. | Parameter | S.E. | Parameter | S.E. | Parameter | S.E. | Parameter | S.E. | Parameter | S.E. | |
qA | [1] | 0.098 | 0.028 | 0.093 | 0.030 | 0.040 | 0.020 | 0.000 | 0.142 | 0.109 | 0.024 | |
τAA | - | [1] | [1] | [1] | [1] | 1.000 | 0.000 | |||||
τAB | - | [0.5] | [0.5] | [1] | [1] | 0.249 | 0.100 | |||||
τBB | - | [0] | [0] | [0] | [0] | 0.034 | 0.030 | |||||
μAA | 36.0 | 0.5 | 64.4 | 4.3 | 65.1 | 4.5 | 51.4 | 2.8 | 40.9 | 8.2 | 62.7 | 3.4 |
μAB | = μAA | 45.6 | 1.8 | 45.7 | 1.9 | 51.4 | 2.8 | 36.0 | 0.5 | 46.1 | 1.4 | |
μBB | = μAA | 33.7 | 0.5 | 33.9 | 0.6 | 34.9 | 0.6 | 36.0 | 0.5 | 33.5 | 0.6 | |
σ2 | 80.6 | 4.6 | 52.4 | 4.2 | 53.5 | 4.7 | 61.8 | 5.5 | 80.6 | 4.6 | 47.1 | 4.9 |
ρMF | 0.199 | 0.072 | 0.327 | 0.093 | 0.315 | 0.091 | 0.246 | 0.079 | 0.199 | 0.072 | 0.334 | 0.098 |
ρMO | 0.196 | 0.050 | [0] | 0.058 | 0.070 | 0.130 | 0.067 | 0.196 | 0.050 | 0.076 | 0.079 | |
ρFO | 0.093 | 0.059 | [0] | -0.070 | 0.069 | -0.025 | 0.064 | 0.093 | 0.059 | -0.051 | 0.076 | |
ρSS | 0.118 | 0.055 | [0] | 0.000 | 0.000 | 0.037 | 0.069 | 0.118 | 0.055 | 0.017 | 0.065 | |
# of | 6 | 6 | 9 | 8 | 8 | 12 | ||||||
parameters | ||||||||||||
-2ln(L) | 4721.80 | 4684.40 | 4682.38 | 4688.22 | 4721.80 | 4677.90 | ||||||
AIC | 4733.8 | 4696.4 | 4700.38 | 4704.22 | 4737.8 | 4701.9 | ||||||
χ2 | 43.9 | 6.5 | 4.48 | 10.32 | 43.9 | |||||||
P | 0.000 | 0.370 | 0.214 | 0.035 | 0.000 | Baseline |
Abbreviation: qA, allele frequency; τAA, τAB, τBB, transmission probability; μAA, μAB, μBB, genotype means; σ2, variance; ρMF, ρMO, ρFO, ρSS, correlation coefficients among spouse, mother-offspring, father-ffspring and sibling pairs; #, number of parameters; ln(L), logarithm of likelihood; AIC, Akaike information criteria; P, p-value by compared with the unrestricted general model.