Table 5.
GeneChip | Feature size | Probe pairs | TF | No. of labs. | No. of arrays | Ka 0.95 | Ka 0.99 | Ka 0.995 | |||
avg | SD | avg | SD | avg | SD | ||||||
HuGeneFL | 24 | 20 | 44 | 2 | 34 | 2.13 | 0.10 | 3.45 | 0.09 | 4.11 | 0.05 |
HG-U95Av2 | 20 | 16 | 36 | 4 | 77 | 2.09 | 0.09 | 3.04 | 0.08 | 3.48 | 0.16 |
HG-U95B to E | 20 | 16 | 36 | 2 | 28 | 2.16 | 0.14 | 3.24 | 0.31 | 3.76 | 0.37 |
HG-U133A 2.0 | 11 | 11 | 22 | 6 | 91 | 2.11 | 0.05 | 3.10 | 0.15 | 3.56 | 0.18 |
HG-U133 Plus 2 | 11 | 11 | 22 | 2 | 28 | 2.12 | --- | 3.03 | --- | 3.44 | --- |
HG-Focus | 18 | 11 | 29 | 1 | 34 | 2.18 | 0.03 | 3.11 | 0.04 | 3.52 | 0.07 |
MG-Mu11kSubA, SubB | 24 | 20 | 44 | 2 | 80 | 2.22 | 0.04 | 3.73 | 0.16 | 4.52 | 0.20 |
Mu19kSubA, B, C | 24 | 20 | 44 | 1 | 12 | 2.26 | --- | 3.95 | --- | 4.56 | --- |
MG-U74Av2 | 20 | 16 | 36 | 6 | 75 | 2.17 | 0.04 | 3.36 | 0.20 | 3.97 | 0.31 |
MG-U430A | 11 | 11 | 22 | 1 | 20 | 2.07 | 0.03 | 2.95 | 0.03 | 3.34 | 0.03 |
RG-U34A | 24 | 16 | 40 | 2 | 45 | 2.16 | 0.05 | 3.24 | 0.15 | 3.78 | 0.17 |
RT-U34 Neurobiology | 24 | 16 | 40 | 1 | 40 | 2.08 | --- | 3.12 | --- | 3.38 | --- |
Drosophila | 20 | 14 | 34 | 1 | 6 | 2.17 | --- | 3.21 | --- | 3.67 | --- |
E. Coli | 24 | 15 | 39 | 2 | 53 | 2.19 | --- | 3.31 | --- | 3.78 | --- |
ATH1 | 18 | 11 | 29 | 4 | 64 | 2.09 | 0.02 | 3.03 | 0.11 | 3.46 | 0.19 |
Arabidopis [s2] | 24 | 16 | 40 | 1 | 7 | 2.15 | --- | 2.89 | --- | 3.18 | --- |
The first two columns of data show the feature size and number of the probe pairs per probe set. TF is the technical factor defined as the sum of feature size and probe pairs. No. of lab gives the number of different laboratories, where the data were generated. No. of arrays gives the number of arrays per the GeneChip type. The last three columns give the mean Kα values at the probability 0.95, 0.99 and 0.995.