Table II.
Hpt proteins in O. sativa
Genes identified using HMMER search; nomenclature based on domain conservation. Putative alternate spliced protein products have postscript a, b, or c.
| Gene | Protein Notationa | TIGR IDb | BACc | Accession No.d | Gene Locuse | AAf |
|---|---|---|---|---|---|---|
| OsHpt1 | OsHpt1 | 11971.m11569 | OJ1150_A11 | AP003928 | LOC_Os01g54050 | 208 |
| OsHpt2 | OsHpt2 | 11978.m08408 | P0439E07 | AP003768 | LOC_Os08g44350 | 147 |
| OsHpt3 | OsHpt3 | 11979.m06878 | OJ1155_H10 | AP005558 | LOC_Os09g39400 | 149 |
| OsHpt4 | OsHpt4 | 11975.m05454 | OJ1725_E07 | AC093920 | LOC_Os05g09410 | 150 |
| OsHpt5 | OsHpt5a | 11975.m64188 | P0483D07 | AC130611 | LOC_Os05g44570 | 152 |
| OsHpt5b | 11975.m08583 | P0483D07 | AC130611 | LOC_Os05g44570 | 104 | |
| OsHpt5c | 11975.m64253 | P0483D07 | AC130611 | LOC_Os05g44570 | 96 |
a
Notation of putative proteins based on conserved domains.
b
IDs given to pseudomolecules by TIGR (http://www.tigr.org/tdb/e2k1/osa1/) from the O. sativa annotation database.
c
BAC IDs from the TIGR database.
d
BAC accession numbers for genomic DNA sequences deposited in the NCBI database (http://www.ncbi.nlm.nih.gov/).
e
Gene locus.
f
The number of predicted amino acid.