Skip to main content
. 2006 Oct;142(2):380–397. doi: 10.1104/pp.106.086371

Table III.

RR and RR-like proteins in O. sativa

Genes identified using HMMER search; nomenclature based on domain conservation. Putative alternate spliced protein products have postscript a, b, or c.

Gene Protein Notationa TIGR IDb BACc Accession No.d Gene Locuse AAf
A-type RR
    OsRRA1 OsRRA1a 11981.m04670 OSJNBa0059J06 AC123526 LOC_Os11g04720 201
OsRRA1b 11981.m28648 OSJNBa0059J06 AC123526 LOC_Os11g04720 208
    OsRRA2 OsRRA2 11982.m04444 OSJNBb0034E23 AL928752 LOC_Os12g04500 201
    OsRRA3 OsRRA3 11971.m13268 P0431G06 AP003683 LOC_Os01g72330 232
    OsRRA4 OsRRA4 11974.m09387 OSJNBb0065J09 AL663010 LOC_Os04g44280 134
    OsRRA5 OsRRA5 11977.m06949 OJ1047_A06 AP003802 LOC_Os07g26720 206
    OsRRA6 OsRRA6 11974.m10657 OSJNBa0018M05 AL606457 LOC_Os04g57720 170
    OsRRA7 OsRRA7 11972.m10856 OJ1124_D06 AP004043 LOC_Os02g58350 131
    OsRRA8 OsRRA8 11972.m09243 B1250G12 AP006452 LOC_Os02g42060 147
    OsRRA9 OsRRA9 11974.m08696 P0076O17 BX548156 LOC_Os04g36070 231
    OsRRA10 OsRRA10 11972.m08606 OSJNBb0038F20 AP005808 LOC_Os02g35180 252
    OsRRA11 OsRRA11 11978.m06899 OJ1705_C03 AP003962 LOC_Os08g28950 167
    OsRRA12 OsRRA12 11978.m06712 P0488B06 AP005523 LOC_Os08g26990 135
    OsRRA13 OsRRA13 11978.m06895 OJ1705_C03 AP003962 LOC_Os08g28900 185
    OsRRA14 OsRRA14a 11973.m10284 OJ1365_D05 AC096855 LOC_Os03g53100 127
OsRRA14b 11973.m35406 OJ1365_D05 AC096855 LOC_Os03g53100 127
    OsRRA15 OsRRA15 11974.m06587 OSJNBa0083 AL662982 LOC_Os04g13480 132
    OsRRA16 OsRRA16 11975.m07520 OSJNBb0092G21 AC134932 LOC_Os05g32880 620
    OsRRA17 OsRRA17 11974.m07929 OSJNBa0020I02 AL662963 LOC_Os04g28120 252
    OsRRA18 OsRRA18 11975.m07521 OSJNBb0092G21 AC134932 LOC_Os05g32890 368
    OsRRA19 OsRRA19 11978.m07556 P0493A04 AP004586 LOC_Os08g35670 614
    OsPRR3 OsRRA20a 11973.m34842 OSJNBa0044H10 AC084405 LOC_Os03g17570 533
OsRRA20b 11973.m34843 OSJNBa0044H10 AC084405 LOC_Os03g17570 473
    OsPRR1 OsRRA21 11972.m33775 OJ1014_H03 AP003980 LOC_Os02g40510 386
    OsRRA22 OsRRA22 11974.m07933 OSJNBa0038P21 AL731588 LOC_Os04g28160 380
B-type RR
    OsRRB1 OsRRB1a 11973.m06685 OSJNBa0081P02 AC107226 LOC_Os03g12350 691
OsRRB1b 11973.m35102 OSJNBa0081P02 AC107226 LOC_Os03g12350 691
OsRRB1c 11973.m35103 OSJNBa0081P02 AC107226 LOC_Os03g12350 691
    OsRRB2 OsRRB2 11972.m06196 OJ1297_C09 AP004087 LOC_Os02g08500 626
    OsRRB3 OsRRB3 11976.m08921 OSJNBa0062J02 AP003517 LOC_Os06g43910 694
    OsRRB4 OsRRB4 11976.m05563 OSJNBb0036B04 AP007226 LOC_Os06g08440 696
    OsRRB5 OsRRB5 11972.m10558 OJ1004_E04 AP003975 LOC_Os02g55320 688
    OsRRB6 OsRRB6 11971.m12881 OSJNOa013M08 AP006838 LOC_Os01g67770 518
    OsRRB7 OsRRB7 11974.m07930 OSJNBa0020I02 AL662963 LOC_Os04g28130 390
PRR
    OsPRR1 OsPRR1a 11972.m09137 OJ1212_C01 AP004083 LOC_Os02g40510 518
OsPRR1b 11972.m33776 OJ1212_C01 AP004083 LOC_Os02g40510 411
    OsPRR2 OsPRR2 11979.m06571 P0515E01 AP005314 LOC_Os09g36220 623
    OsPRR3 OsPRR3a 11973.m07182 OSJNBa0044H10 AC084405 LOC_Os03g17570 767
OsPRR3b 11973.m34844 OSJNBa0044H10 AC084405 LOC_Os03g17570 745
    OsPRR4 OsPRR4 11977.m09154 P0627E10 AP005199 LOC_Os07g49460 742
    OsPRR5 OsPRR5a 11981.m04789 OSJNBa0052H02 AC133217 LOC_Os11g05930 699
OsPRR5b 11981.m28729 OSJNBa0052H02 AC133217 LOC_Os11g05930 623
OsPRR5c 11981.m28730 OSJNBa0052H02 AC133217 LOC_Os11g05930 623
OsPRR5d 11981.m28731 OSJNBa0052H02 AC133217 LOC_Os11g05930 620
a

Notation of putative proteins based on conserved domains.

b

IDs given to pseudomolecules by TIGR (http://www.tigr.org/tdb/e2k1/osa1/) from the O. sativa annotation database.

c

BAC IDs from the TIGR database.

d

BAC accession numbers for genomic DNA sequences deposited in the NCBI database (http://www.ncbi.nlm.nih.gov/).

e

Gene locus.

f

The number of predicted amino acid.