Table III.
Cross-comparison of genes related to some important biochemical and biological processes in imbibed seeds and unopened young flower buds
Genes listed here are summarized from Supplemental Tables S3, S5, S9, and S12 based on information provided in Gene Title, Molecular Function, and Gene Description by Affymetrix. DELLA-D, DELLA-down genes; DELLA-U, DELLA-up genes.
| Molecular Function | Imbibed Seeds
|
Unopened Flower Buds
|
||
|---|---|---|---|---|
| DELLA-D | DELLA-U | DELLA-D | DELLA-U | |
| Cell growth and cell wall loosening | ||||
| Xyloglucan endotransglycosylase/hydrolase | At2g06850 | At5g57550 | At4g37800 | |
| At3g23730 | At5g57560 | |||
| At4g03210 | ||||
| At4g30280 | ||||
| At4g30290 | ||||
| At5g13870 | ||||
| At5g57560 | ||||
| Pectinesterase | At1g02810 | |||
| At1g11580 | ||||
| At3g10720 | ||||
| At3g14310 | ||||
| At4g02330 | ||||
| At4g33220 | ||||
| Cellulose synthase | At4g18780 | |||
| At4g24000 | ||||
| At5g17420 | ||||
| At5g44030 | ||||
| Cellulase | At1g64390 | At1g13130 | ||
| At1g70710 | At3g26140 | |||
| 1,4-β-Mannan endohydrolase | At5g66460 | At3g10890 | ||
| Glycoside hydrolase | At3g16920 | |||
| At3g42950 | ||||
| Expansin | At1g69530 | At2g18660 | At1g20190 | At2g18660 |
| At2g37640 | At2g37640 | |||
| At2g40610 | At2g40610 | |||
| At5g02260 | At3g29030 | |||
| At5g05290 | ||||
| Tubulin α-chain | At1g04820 | |||
| At1g50010 | ||||
| At4g14960 | ||||
| Tubulin β-chain | At1g20010 | |||
| At1g75780 | ||||
| At2g29550 | ||||
| At5g12250 | ||||
| Transcription factors | ||||
| bHLH family proteins | At1g51070 | At3g62090 | At1g25330 | At4g01460 |
| At1g63650 | At5g46760 | At1g59640 | At5g46760 | |
| At1g74500 | At5g39860 | At5g50915 | ||
| At4g36930 | ||||
| MYB family proteins | At1g01380 | At1g17950 | At1g06180 | |
| At1g22640 | At2g38090 | At3g11280 | ||
| At2g39880 | At3g01140 | At5g44190 | ||
| At3g28910 | At3g27810 | At5g59780 | ||
| At5g14750 | At3g27812 | |||
| At5g58900 | At4g34990 | |||
| At5g60890 | At5g40350 | |||
| Zinc-finger family proteins | At1g14440 | At2g31380 | At5g25830 | At1g13400 |
| At1g75710 | At2g47890 | At1g66140 | ||
| At2g24790 | At1g68520 | |||
| At2g28200 | At1g73870 | |||
| At2g01940 | ||||
| At5g25160 | ||||
| MADS box family proteins | At1g77950 | At2g45650 | ||
| At3g58780 | ||||
| At4g09960 | ||||
| WRKY family proteins | At2g23320 | |||
| At3g56400 | ||||
| At4g23810 | ||||
| AP2 domain containing protein | At2g40220 | At1g53910 | At1g15360 | At1g25560 |
| At5g18450 | At1g16060 | |||
| At5g67180 | ||||
| Squamosa promoter-binding protein | At1g27360 | At1g53160 | ||
| At1g27370 | ||||
| At3g15270 | ||||
| At5g43270 | ||||
| Homeodomain transcription factor | At1g05230 | At4g35550 | At1g62990 | |
| At3g60390 | At2g17950 | |||
| At4g32880 | ||||
| At5g15150 | ||||
| Protein phosphorylation | ||||
| Protein kinase | At1g49580 | At1g11050 | At1g61590 | At1g16260 |
| At3g08730 | At1g70520 | At5g57670 | At1g21250 | |
| At3g14370 | At1g70530 | At1g21270 | ||
| At5g28290 | At2g35050 | At1g29720 | ||
| At5g50000 | At2g39360 | At1g65190 | ||
| At5g67080 | At2g45910 | At1g66880 | ||
| At3g22750 | At1g66920 | |||
| At5g03140 | At1g69730 | |||
| At5g58350 | At2g26980 | |||
| At2g32680 | ||||
| At3g09830 | ||||
| At3g23110 | ||||
| At3g45640 | ||||
| At3g45780 | ||||
| At4g04540 | ||||
| At5g25440 | ||||
| At5g38210 | ||||
| At5g40540 | ||||
| At5g60900 | ||||
| Leu-rich repeat proteins | At1g10850 | At1g09970 | At4g18640 | At1g09970 |
| At1g66150 | At1g33560 | |||
| At2g25790 | At1g35710 | |||
| At3g02880 | At1g51805 | |||
| At3g56370 | At1g56120 | |||
| At4g36180 | At2g31880 | |||
| At5g43020 | At3g11010 | |||
| At5g48940 | At4g08850 | |||
| At5g51560 | At5g48380 | |||
| Receptor protein kinase | At5g60890 | At1g75820 | ||
| At4g23130 | ||||
| At4g23180 | ||||
| S-locus lectin protein kinase | At1g11350 | |||
| At2g19130 | ||||
| At4g11900 | ||||
| At4g27300 | ||||
| S-receptor kinase | At1g65790 | |||
| Disease and stress response | ||||
| Response to disease and pathogens | At1g18250 | At2g43590 | At1g55020 | At1g33560 |
| At1g73620 | At1g72260 | At1g72930 | ||
| At1g80460 | At3g11480 | At2g32680 | ||
| At3g28910 | At3g13650 | At2g43570 | ||
| At3g16920 | At2g43620 | |||
| At3g21240 | At3g11010 | |||
| At4g23690 | At3g20590 | |||
| At5g24780 | At3g23110 | |||
| At3g50950 | ||||
| At4g16990 | ||||
| At4g19530 | ||||
| At4g26090 | ||||
| At5g45250 | ||||
| Water and salt stress | At1g20440 | At1g01470 | At1g05260 | At1g33560 |
| At1g54410 | At1g01470 | At1g29395 | At2g21620 | |
| At3g08730 | At1g72100 | At1g52690 | ||
| At4g34240 | At2g21490 | At2g21490 | ||
| At4g39090 | At2g38905 | At5g24780 | ||
| At5g25610 | At2g41280 | |||
| At2g42560 | ||||
| At3g22490 | ||||
| At3g22500 | ||||
| At3g50980 | ||||
| At3g53040 | ||||
| At4g36600 | ||||
| At5g52300 | ||||
| Oxidative stress | At5g64100 | At3g59845 | At3g45640 | |
| At5g40150 | At4g11290 | |||
| At5g39580 | At4g30170 | |||
| At2g22420 | At5g24780 | |||
| At5g51890 | ||||
| Cold | At3g08730 | At2g38905 | At1g05260 | At5g57560 |
| At5g12250 | At5g52300 | At1g29395 | ||
| At5g57560 | ||||
| Heat | At3g46230 | At5g67180 | ||
| UV | At3g12610 | At3g21240 | ||
| At4g13770 | ||||
| Toxin catabolism | At1g78370 | At1g17190 | At1g02930 | |
| At2g30860 | ||||
| At3g09270 | ||||
| At3g43800 | ||||
| Multidrug transport | At1g71870 | At3g26590 | ||
| At4g23030 | At4g22790 | |||
| At5g49130 | ||||
| Wounding | At1g22640 | At1g55020 | At2g38870 | |
| At3g11480 | ||||
| At3g21240 | ||||
| At5g24780 | ||||
| DNA damage response | At3g22880 | At3g12710 | ||
| At4g02060 | At5g44680 | |||
| At5g44680 | ||||
| Others | At2g23050 | At1g03380 | At1g11000 | At1g31580 |
| At3g19820 | At1g22070 | At1g52040 | ||
| At3g58450 | At2g43550 | |||
| At5g51060 | ||||
| Hormone response | ||||
| ABA | At2g40220 | At1g01470 | At1g29395 | At1g75750 |
| At4g34240 | At1g72100 | At1g52690 | At2g26980 | |
| At5g25610 | At2g41280 | At1g55020 | At3g22060 | |
| At2g42560 | At5g59320 | At3g45640 | ||
| At3g11050 | ||||
| At3g22490 | ||||
| At3g22500 | ||||
| At3g53040 | ||||
| At4g36600 | ||||
| At5g52300 | ||||
| GA | At1g74670 | At1g15550 | At1g74670 | At1g15550 |
| At5g14920 | At1g78440 | At1g22690 | ||
| At5g15230 | At1g75750 | |||
| At4g25420 | ||||
| Auxin | At2g34680 | At1g59500 | At1g29510 | At2g45210 |
| At3g07390 | At1g60680 | At1g44350 | At3g60690 | |
| At4g34760 | At1g60710 | At2g21220 | ||
| At5g57090 | At2g28350 | At3g15540 | ||
| At2g45210 | At3g23050 | |||
| At3g02875 | At3g25290 | |||
| At4g33670 | At4g12410 | |||
| At4g13790 | ||||
| At5g47530 | ||||
| Ethylene | At1g28360 | At1g15360 | At1g05010 | |
| At3g58450 | At1g28360 | |||
| At4g33670 | At5g25190 | |||
| At5g10120 | ||||
| At5g47220 | ||||
| BR | At3g50750 | At1g75750 | ||
| At4g30610 | ||||
| Cytokinin | At1g28230 | At2g26980 | ||