Table III.
Genes coexpressed with the flavonoid biosynthesis pathway
Top-ranking genes identified by PLC analysis using p value < 1e-80 are shown with GO annotations. Asterisks indicate genes that are already annotated as members of the flavonoid biosynthesis pathway. The number of coexpressed flavonoid biosynthesis genes is indicated in parentheses in the column labeled Gene ID.
| Rank | Gene ID | Annotations (GO ID and Term) |
|---|---|---|
| 1 | AT5G08640 (5) | GO:0008372:cellular component unknown |
| GO:0005554:molecular function unknown | ||
| GO:0000004:biological process unknown | ||
| 2 | AT5G17050 (5) | GO:0016757:transferase activity, transferring glycosyl groups |
| GO:0008194:UDP-glycosyltransferase activity | ||
| GO:0008152:metabolism | ||
| GO:0016999:antibiotic metabolism | ||
| GO:0009507:chloroplast | ||
| 3* | AT3G51240 (4) | GO:0009813:flavonoid biosynthesis |
| GO:0008372:cellular component unknown | ||
| GO:0045486:naringenin 3-dioxygenase activity | ||
| 4* | AT5G05270 (4) | GO:0005554:molecular function unknown |
| GO:0009813:flavonoid biosynthesis | ||
| GO:0008372:cellular component unknown | ||
| 5* | AT5G13930 (4) | GO:0009715:chalcone biosynthesis |
| GO:0009705:vacuolar membrane (sensu Magnoliophyta) | ||
| GO:0016210:naringenin-chalcone synthase activity | ||
| GO:0005783:endoplasmic reticulum | ||
| GO:0009813:flavonoid biosynthesis | ||
| 6* | AT3G55120 (4) | GO:0045430:chalcone isomerase activity |
| GO:0005783:endoplasmic reticulum | ||
| GO:0009813:flavonoid biosynthesis | ||
| GO:0009705:vacuolar membrane (sensu Magnoliophyta) | ||
| GO:0009411:response to UV | ||
| GO:0042406:extrinsic to endoplasmic reticulum membrane | ||
| 7* | AT1G65060 (4) | GO:0009698:phenylpropanoid metabolism |
| GO:0009411:response to UV | ||
| GO:0016207:4-coumarate-CoA ligase activity | ||
| GO:0008372:cellular component unknown | ||
| 8 | AT1G01280 (3) | GO:0004497:monooxygenase activity |
| GO:0019825:oxygen binding | ||
| GO:0005509:calcium ion binding | ||
| GO:0006118:electron transport | ||
| GO:0012505:endomembrane system | ||
| 9 | AT4G20420 (3) | GO:0000004:biological process unknown |
| GO:0005554:molecular function unknown | ||
| GO:0012505:endomembrane system | ||
| 10 | AT3G11980 (3) | GO:0009507:chloroplast |
| GO:0009522:PSI | ||
| GO:0016628:oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | ||
| GO:0009556:microsporogenesis |