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. 2006 Aug;44(8):2792–2800. doi: 10.1128/JCM.00295-06

TABLE 1.

Positions and mutations for which probes have been included on the chip

Gene Position on codon WT amino acida Mutant amino acid(s) Gene Position on codon WT amino acida Mutant amino acid(s)
Pol tp17 G Del s207 V I, M, L, E
tp18 T Del s210 S T, R, N
sp8 V D, F, S, L s213 I M, L
sp35 A D, V, S, T s216 L -, S
rt70 T S s220 F C, L
rt71 N T s229 L V, M
rt86 A P s306 P S
rt92 P L Core BCP 1752 A T, G, C
rt100 H R, N BCP 1753 T A, C, G
rt102 L I, V BCP 1754 T C, G
rt115 L V BCP 1757 G A
rt128 T N, A BCP 1762 A T
rt133 H Q BCP 1764 G A
rt135 S H, Y, C BCP 1766 C T, G
rt153 W Q, R BCP 1768 T A
rt173 V L, G BCP 1770 G T
rt177 P L BCP 1802 C T
rt180 L M, L BCP 1803 G T, C
rt181 A G BCP 1809 G T
rt184 T N, S BCP 1810 C T
rt190 V M, I BCP 1811 A C, G
rt204 M V, I BCP 1812 C T
rt207 V I, M, L, E BCP 1748-1758 Del
rt212 K R BCP 1750-1770 Del
rt213 S T, N BCP 1753-1772 Del
rt217 R L BCP 1755-1759 Del
rt229 L V, M BCP 1755-1771 Del
rt331 L P BCP 1755-1774 Del
rt332 S C BCP 1766-1773 Del
rt336 M L, Q, I BCP 1758-1765 Del
S pre-S1 5 S Y, L, T BCP 1759-1766 Del
pre-S2 1 M V BCP 1760-1765 Del
pre-S2 13 Q L, T, I BCP 1757-1777 Del
s40 N S BCP 1763-1770 Del
s85 F C BCP 1765-1772 Del
s96 V G BCP 1767 Ins
s98 L V BCP 1767-1774 Del
s100 Y C, F BCP 1768-1774 Del
s101 Q K, R BCP 1770-1776 Del
s110 I T, L pre-C 1 M -, L, P, K, T, R, I
s114 T S, Q pre-C 2 Q -, L, R
s115 T A, Q pre-C 9 I T, N
s118 T M, V pre-C 11 S L
s120 P T, Q pre-C 13 T T, S, L
s121 C R pre-C 15 P S, L
s122 K R pre-C 16 T I
s123 T I, N pre-C 17 V F, L
s125 T M, L pre-C 21 K -
s126 T I, S, A pre-C 25 G G
s127 P S, T, L pre-C 28 W R, -
s128 A V pre-C 29 G S, D
s129 Q N, H, R, K, L C2 D Ins
s130 G N, R, E, D, S C5 P T, S, A
s131 N T C27 V I, N
s134 F I, Y, L C36 A Del
s138 C Y, W C38 Y H, D, F
s140 T S, I C40 E D, N, T
s141 K E C60 L V, I
s142 P S C 77 E D, N, Q, A
s143 T M, S, L C 84 L S, A, Q
s144 D A, E C 97 I L, F
s145 G R, K C 130 P T, I, L, S, Q
s146 N S X x26 R C, S, H
s157 A D, V, G x30 L V, F, I
s158 F L, S x80 E R, K, A
s159 A G x82 T A, S
s160 K R x86 H S, P, R, N, D
s161 Y F x87 Q R, H, W, M, L, G, -
s168 V A, I x88 I N, H, S, G, F, V, A, M
s171 S Y x94 H Y
s172 W - x101 P S, F, A, T
s175 L S x102 A G, V, S, T
s178 P Q x103 A K, E, D
s189 T I x116 V L
s192 L P x123 L S, F
s196 W L x125 E N, G, A
s198 M I x127 I S, M, N, L, G, V, F, T
s199 W - x130 K M
s204 S R, N, G, L x131 V T, I, S
s205 L R x144 A S, V, P
a

The wild-type (WT) sequence is that of genotype A (GenBank accession number X02763).

b

Del, deletion; Ins, insertion; -, no amino acid.