TABLE 5.

Kappa values and P values by McNemar's test for individual HPV genotypes detectable by both assays^a

Oncogenic potential	Genotype	No. of genotypes found positive by:			κ value (95% CI)b	P value (McNemar's test)
		LiPA	LA	LiPA and LA
High risk	16	39	45	38	0.874 (0.788-0.959)d	0.08
	18	14	15	13	0.887 (0.760-1.014)d	1.00
	31	13	13	11	0.833 (0.672-0.995)d	0.62
	33	10	9	8	0.833 (0.645-1.020)d	1.00
	35	9	8	8	0.938 (0.817-1.059)d	1.00
	39	7	9	7	0.869 (0.687-1.050)d	0.48
	45	5	8	5	0.761 (0.492-1.029)e	0.25
	51	16	11	11	0.799 (0.626-0.973)e	0.07
		52	23	21	20	0.896 (0.795-0.997)d	0.62
		56	12	9	8	0.747 (0.528-0.965)e	0.37
		58	8	11	8	0.833 (0.646-1.020)d	0.25
		59	6	11	6	0.692 (0.426-0.958)e	0.07
Probable hr	53	20	17	16	0.848 (0.718-0.979)d	0.37
	66	9	8	7	0.814 (0.606-1.023)d	1.00
Low risk	6	11	9	9	0.894 (0.748-1.040)d	0.48
	11	4	3	2	0.563 (0.072-1.053)f	1.00
	40	0	0	0
	42	2	7	2	0.434 (−0.055-0.923)f	0.07
	54	9	18	8	0.562 (0.311-0.812)f	0.02
	70	6	6	6	1.000 (1.000-1.000)c

^aThe results for 112 concordant, 36 compatible, and 22 discordant samples after initial analysis are shown.

^bCI, confidence interval.

^cStrength of agreement considered perfect.

^dStrength of agreement considered very good.

^eStrength of agreement considered good.

^fStrength of agreement considered moderate.