Table 2.
Gene | Forward Primer Sequence [5'→3'] | Position in cDNA | Reverse Primer Sequence [5'→3'] | Position in cDNA | Amplicon Length | E% | R2 |
Act-B | CCATCGGCAATGAGCGGTTCC | 3rd Exon | CGTGTTGGCATACAGGTCCTTCC | 4th Exon | 146bp | 97.9 | 0.997 |
B2M | TGGCTCCTTTCGTGACCTTGG | 1st Exon | GTCGTGAGTAAACCTGAACCTTCG | 2nd Exon | 96bp | 99 | 0.996 |
GAPDH | CAAGGCTGTGGGCAAGGTCATC | 7th Exon | TTCTCCAGGCGGCAGGTCAG | 7th Exon | 111bp | 97.4 | 0.995 |
HPRT1 | GTCAAGCAGCATAATCCAAAGATG | 6th Exon | GTCTGGTCTATATCCAACACTTCG | 7th Exon | 84bp | 98.1 | 0.998 |
PGK1 | ACAATGGAGCCAAGTCAG | 3rd Exon | CACGCAGTCCTTCAAGAAC | 4th Exon | 146bp | 97.4 | 0.996 |
RPL4 | CAGACCTTAGCAGAATCTTGAAAAGC | 8th Exon | CCTGGCGAAGAATGGTGTTCC | 9th Exon | 171bp | 99.9 | 0.998 |
RPS18 | CAATTAAGGGTGTGGGGCGAAG | 2nd/3rd Exon | TCTTGTATTGGCGTGGATTCTGC | 4th Exon | 141bp | 100.8 | 0.999 |
SDHA | TCTTTCCCACCAGGTCACACAC | 3rd Exon | CCAGTCGGAGCCCTTCACG | 4th Exon | 119bp | 88.2 | 0.993 |
TFRC | ACCATCTCAGTCATCAGGATTG | 8th Exon | CATTCTTGTTCTGTGAGGATACC | 9th Exon | 152bp | 98.1 | 0.998 |
YWHAZ | AAATGAAAGGAGACTACTACCGCTA | 2nd Exon | AGACCCAATCTGATAGGATGTGTTG | 3rd Exon | 151bp | 95.9 | 0.994 |
Primers are located in different exons, except for GAPDH, where primers are located in the same exon. E is a measure of real-time reaction efficiency and R2 indicates reproducibility of the reaction.