Fig. 3.

Summary of chromosomal modules. Shown is a list of all modules containing chromosomal characteristics or that have chromatin modifiers as trans-E regulators. The columns in the table (in order) are as follows: module, module number; #genes, number of genes in the module; runs, whether the module contains multiple or long runs of genes along the chromosome (blue); dom, whether the module exhibits enrichment for some chromosomal domain (light cyan, telomeres; dark cyan, Ty/LTR); target enrichment, list of chromatin modification complexes such that the module is enriched for DEGs of some gene in the complex (sorted in order of P value); chrom, whether the module was characterized as chromosomal (purple); reg-E, chromatin modifiers that are trans-E module regulators; reg-G, chromatin modifiers with SNPs that are in the region of trans-G module regulators. The strong overlap between different chromosomal characteristics (runs, domains, and chromatin DEGs) supports our definition of a chromosomal module as one that contains two of three characteristics. There is significant overlap between chromosomal modules and modules predicted by our analysis to have a chromatin modifier as a regulator (see Results).