TABLE 2.
Organism
|
|||||
---|---|---|---|---|---|
Arabidopsis | Maize | Drosophila | Mouse | ||
Technology: | Ara 6k cDNA array | Northern blotting | Agilent long-oligo array | Affymetrix MG430v2.0 | |
Probe no./gene no.: | 6008/4876 | 30/30 | 21929/12017 | 45000/39000 | |
Pool or biorep: | Pool (%) | Pool | Pool (%) | Biorep (%) | |
P1 vs. P2 | 27–37a | 11–15 | 25 | 19.9 | |
F1vs. 1/2(P1 + P2) | 6.4–21b | 19–20 | 33 | 0.8 | |
F1vs. F1′ | 3.7–6.4c | NT | 9–20 | 0.8 | |
Overdominance | 9d | NT | 5e | 0.4 | |
Significance level | Vary | Nominal, 0.05 | Bonferroni, 0.05 | FDR, 0.05 |
Biorep, biological replicate; NT, not tested.
One to two false positives in each gene list.
FDR < 0.001.
FDR < 0.01.
99.8% per gene confidence interval.
Based on fold change: F1 is at least 1.25-fold greater or less than both parental lines.