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. 2006 Oct;72(10):6578–6583. doi: 10.1128/AEM.00787-06

TABLE 2.

Microbial richness of the samplea

OTU boundary (%)b Statistic Detected richness of the sample Estimate of the total sample's richness
Parametric model
Nonparametric estimator
Inverse Gaussian Lognormal Pareto 2-mixed exponential ACE1c ACE1d
99 No. of OTUs 107 509 340 290 398 311 499
SE 244 170 74 156 84 394
Naïve GOF 0.30 0.17 0.10 0.11 NP
Asymp. GOF 0.27 0.16 0.11 0.17
τ 10 10 10 31 10 31
98 No. of OTUs 99 285 223 191 263 228 370
SE 95 74 19 74 54 253
Naïve GOF 0.19 0.26 0.12 0.29 NP
Asymp. GOF 0.71 0.33 0.15 0.38
τ 12 10 10 31 10 31
97 No. of OTUs 91 198 182 176 230 186 297
SE 48 53 19 65 43 181
Naïve GOF 0.39 0.30 0.21 0.12 NP
Asymp. GOF 0.59 0.49 0.28 0.49
τ 9 9 9 31 9 31
96 No. of OTUs 85 190 173 160 244 173 244
SE 52 56 17 100 40 123
Naïve GOF 0.13 0.09 0.07 0.11 NP
Asymp. GOF 0.21 0.16 0.04 0.32
τ 9 9 9 31 9 31
95 No. of OTUs 81 164 153 140 215 156 212
SE 40 46 16 84 35 104
Naïve GOF 0.26 0.19 0.15 0.15 NP
Asymp. GOF 0.23 0.19 0.06 0.32
τ 9 9 9 31 9 31
90 No. of OTUs 50 99 92 76 178 98 106
SE 34 27 10 185 31 34
Naïve GOF 0.06 0.05 0.04 0.12 NP
Asymp. GOF 0.43 0.36 0.13 0.15
τ 11 11 11 32 11 32
80 No. of OTUs 21 56,976 83 45 221 60 203
SE 131,990 123 10 467 35 181
Naïve GOF 0.02 0.01 0.02 0.00 NP
Asymp. GOF NA NA NA NA
τ 5 5 5 32 5 32
a

Boldfaced values represent selected estimates. τ, maximum frequency used in statistical procedure. Naïve GOF, uncorrected chi-square GOF P value; Asymp. GOF, asymptotically correct chi-square GOF P value; NA, not available; NP, computation not possible.

b

Cutoff value for percent sequence similarity.

c

For default τ.

d

For maximum τ allowed by parametric model fit.