TABLE 2.
OTU boundary (%)b | Statistic | Detected richness of the sample | Estimate of the total sample's richness
|
|||||
---|---|---|---|---|---|---|---|---|
Parametric model
|
Nonparametric estimator
|
|||||||
Inverse Gaussian | Lognormal | Pareto | 2-mixed exponential | ACE1c | ACE1d | |||
99 | No. of OTUs | 107 | 509 | 340 | 290 | 398 | 311 | 499 |
SE | 244 | 170 | 74 | 156 | 84 | 394 | ||
Naïve GOF | 0.30 | 0.17 | 0.10 | 0.11 | NP | |||
Asymp. GOF | 0.27 | 0.16 | 0.11 | 0.17 | ||||
τ | 10 | 10 | 10 | 31 | 10 | 31 | ||
98 | No. of OTUs | 99 | 285 | 223 | 191 | 263 | 228 | 370 |
SE | 95 | 74 | 19 | 74 | 54 | 253 | ||
Naïve GOF | 0.19 | 0.26 | 0.12 | 0.29 | NP | |||
Asymp. GOF | 0.71 | 0.33 | 0.15 | 0.38 | ||||
τ | 12 | 10 | 10 | 31 | 10 | 31 | ||
97 | No. of OTUs | 91 | 198 | 182 | 176 | 230 | 186 | 297 |
SE | 48 | 53 | 19 | 65 | 43 | 181 | ||
Naïve GOF | 0.39 | 0.30 | 0.21 | 0.12 | NP | |||
Asymp. GOF | 0.59 | 0.49 | 0.28 | 0.49 | ||||
τ | 9 | 9 | 9 | 31 | 9 | 31 | ||
96 | No. of OTUs | 85 | 190 | 173 | 160 | 244 | 173 | 244 |
SE | 52 | 56 | 17 | 100 | 40 | 123 | ||
Naïve GOF | 0.13 | 0.09 | 0.07 | 0.11 | NP | |||
Asymp. GOF | 0.21 | 0.16 | 0.04 | 0.32 | ||||
τ | 9 | 9 | 9 | 31 | 9 | 31 | ||
95 | No. of OTUs | 81 | 164 | 153 | 140 | 215 | 156 | 212 |
SE | 40 | 46 | 16 | 84 | 35 | 104 | ||
Naïve GOF | 0.26 | 0.19 | 0.15 | 0.15 | NP | |||
Asymp. GOF | 0.23 | 0.19 | 0.06 | 0.32 | ||||
τ | 9 | 9 | 9 | 31 | 9 | 31 | ||
90 | No. of OTUs | 50 | 99 | 92 | 76 | 178 | 98 | 106 |
SE | 34 | 27 | 10 | 185 | 31 | 34 | ||
Naïve GOF | 0.06 | 0.05 | 0.04 | 0.12 | NP | |||
Asymp. GOF | 0.43 | 0.36 | 0.13 | 0.15 | ||||
τ | 11 | 11 | 11 | 32 | 11 | 32 | ||
80 | No. of OTUs | 21 | 56,976 | 83 | 45 | 221 | 60 | 203 |
SE | 131,990 | 123 | 10 | 467 | 35 | 181 | ||
Naïve GOF | 0.02 | 0.01 | 0.02 | 0.00 | NP | |||
Asymp. GOF | NA | NA | NA | NA | ||||
τ | 5 | 5 | 5 | 32 | 5 | 32 |
Boldfaced values represent selected estimates. τ, maximum frequency used in statistical procedure. Naïve GOF, uncorrected chi-square GOF P value; Asymp. GOF, asymptotically correct chi-square GOF P value; NA, not available; NP, computation not possible.
Cutoff value for percent sequence similarity.
For default τ.
For maximum τ allowed by parametric model fit.