Table 3.
Classification of putative protein-coding genes of Rhizobium sp. NGR234 cured of its symbiotic plasmid (= ANU265)
| Clone | Homolog description | Clone | Homolog description | ||
| No. | Name | No. | Name | ||
| Cell envelope and cellular processes | 53 | 26d04 | sugar transp. ATP-binding prot. | ||
| Cell wall | 54 | 26h11 | sugar transp. ATP-binding prot. | ||
| 1 | 01d07 | N-acetylmuramoyl-L-alanine amidase | 55 | 05b03 | sugar transp. system permease prot. |
| 2 | 06g04 | N-acetylglucosamine-1-phosphate uridyl Tase | 56 | 30b08 | sugar transp. system permease prot. |
| 3 | 26b06 | UDP-N-acetylenolpyruvoylglucosamine RDase MurB | 57 | 26a07 | sugar ABC transp., ATP-binding prot. |
| 4 | 28f02 | UDP-N-acetylmuramate-alanine ligase MurC | 58 | 14e06 | xylose transp. permease prot. |
| 5 | 22b10 | UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD | 59 | 03f04 | xylose transp. permease prot. |
| 6 | 29g07 | UDP-N-acetylmuramyl-tripeptide synthetase MurE | 60 | 19a04 | maltose binding prot. |
| 7 | 08h05 | UDP-N-acetylmuramyl-tripeptide synthetase MurE | 61 | 11c09 | membrane bound sugar transp. prot. |
| 8 | 12f10 | outer membrane prot. | 62 | 18a12 | sugar transp. ATP-binding prot. |
| 9 | 17a08 | outer membrane prot. Omp28 | 63 | 28e01 | sugar transp. ATP-binding prot. |
| 10 | 21h07 | group 1 outer membrane prot. OMP1 precursor60 | 64 | 30f09 | sugar transp. prot. |
| 11 | 18f12 | penicillin-binding prot. 1B | 65 | 01c10 | galactoside transp. system permease prot. |
| 12 | 19h11 | penicillin-binding prot. 1A | 66 | 19g07 | galactoside transp. ATP-binding prot. |
| 13 | 29f10 | D-alanyl-D-alanine carboxypeptidase | 67 | 21e06 | branched-chain amino acid transp. |
| 14 | 19d01 | monofunctional biosynthetic peptidoglycan TGase MtgA | 68 | 29a02 | amino-acid ABC transp. permease prot. |
| 15 | 28f09 | lysozyme M1 precursor Acm | 69 | 27b03 | amino-acid ABC transp. permease prot. |
| 16 | 03f07 | acriflavine resistance prot. E precursor AcrE | 70 | 05c04 | ABC transp. permease prot. |
| 16a | 09h01 | overlaps clone 03f07 | 71 | 07b05 | amino-acid ABC transp. ATP-binding |
| Transport/ binding proteins and lipoproteins | 72 | 19h08 | amino-acid ABC transp. ATP-binding | ||
| 17 | 22a03 | sugar-binding transp. ATP-binding prot. | 73 | 06a09 | amino-acid ABC transp. ATP-binding |
| 18 | 08h08 | ABC transp. ATP-binding prot. | 74 | 11d03 | glutamate/ aspartate transp. system permease prot. |
| 19 | 29c10 | sugar ABC transp., permease prot. | 75 | 21d10 | high-affinity branched-chain amino acid transp. |
| 20 | 03f05 | inner membrane prot.of trehalose/ maltose transp. | 75a | 24a05 | overlaps clone 21d10 |
| 21 | 02h10 | transp. permease prot. | 76 | 02c01 | amino acid ABC transp. |
| 21a | 09f05 | overlaps clone 02h10 | 77 | 08f08 | branched-chain amino acid transp. prot. |
| 22 | 11c04 | ABC transp. permease prot. | 78 | 10e04 | branched-chain amino acid transp. prot. |
| 23 | 12d03 | inner membrane ABC transp. | 79 | 17b01 | branched-chain amino acid transp. prot. |
| 24 | 18h08 | sugar ABC transp. ATP-binding prot. | 80 | 08g08 | branched-chain amino acid transp. prot. |
| 25 | 21b03 | ATP-binding transp. prot. | 81 | 04g02 | branched-chain amino acid transp. permease prot. |
| 26 | 01h04 | ATP-binding transp. prot. | 82 | 28h02 | high-affinity branched-chain amino acid transp. |
| 27 | 21b11 | ATP-binding transp. prot. | 82a | 08a04 | overlaps clone 28h02 |
| 28 | 26g01 | maltose/ maltodextrin transp. ATP-binding prot. | 82b | 11g01 | overlaps clone 28h02 |
| 29 | 18g11 | sugar ABC transp. ATP-binding prot. | 83 | 16c12 | periplasmic dipeptide transp. prot. precursor |
| 30 | 24e03 | ABC transp. ATP-binding prot. | 84 | 03h07 | dipeptide ABC transp. |
| 31 | 02c09 | ABC transp. ATP-binding prot. | 85 | 10d11 | peptide ABC transp. permease prot. |
| 31a | 12f05 | overlaps clone 02c09 | 86 | 15e08 | ABC transp. ATP-binding prot. |
| 32 | 28g12 | ABC transp. ATP-binding prot. | 87 | 04a06 | peptide ATP-bind. transp. |
| 32a | 01a11 | overlaps clone 28g12 | 88 | 09a09 | peptide ABC transp. permease prot. |
| 32b | 09h06 | overlaps clone 28g12 | 89 | 12c06 | peptide ABC transp. permease prot. |
| 33 | 01a10 | ribose transp. ATP-binding prot. | 90 | 03f10 | ABC transp. |
| 34 | 06h03 | D-ribose-binding periplasmic prot. precursor | 91 | 22c01 | ABC transp. ATP-binding prot. |
| 35 | 14e04 | sugar transp. system permease prot. | 92 | 19b12 | ABC transp. ATP-binding prot. |
| 36 | 18d02 | sugar transp. system permease prot. | 93 | 23g09 | peptide ABC transp. ATP-binding prot. |
| 37 | 04e03 | sugar transp. system permease prot. | 94 | 18e05 | ABC transp. ATP-binding prot. |
| 38 | 14f09 | sugar transp. system permease prot. | 95 | 14d12 | oligopeptide ABC transp. |
| 39 | 08g05 | sugar transp. system permease prot. | 96 | 19c05 | oligopeptide binding prot. |
| 40 | 06b09 | sugar transp. system permease prot. | 97 | 21g02 | peptide ABC transp. |
| 41 | 19e12 | sugar transp. system permease prot. | 98 | 22h09 | dipeptide transp. ATP-binding prot. |
| 42 | 16f12 | membrane-spanning permease | 99 | 25c02 | oligopeptide transp. ATP-binding prot. |
| 43 | 26d10 | sugar transp. system permease prot. | 99a | 23c05 | overlaps clone 99 |
| 44 | 23b06 | sugar transp. system permease prot. | 100 | 27b09 | oligopeptide ABC transp. permease prot. |
| 45 | 27h12 | ABC transp. integral membrane prot. | 101 | 27c09 | oligopeptide-binding prot. precursor |
| 46 | 22d10 | ribose ABC transp. permease prot. | 102 | 30a09 | oligopeptide transp. ATP-binding prot |
| 47 | 25a11 | sugar transp. | 103 | 03b02 | ABC transp., y4wM pNGR234a |
| 48 | 21a06 | sugar transp. ATP-binding prot. | 104 | 03g02 | ABC transp., y4wM pNGR234a |
| 49 | 21b02 | sugar transp. ATP-binding prot. | 105 | 07c06 | ABC transp., y4wM pNGR234a |
| 50 | 24d10 | galactoside transp. ATP-binding prot. MglA | 106 | 30e02 | ATP-binding prot. |
| 51 | 24e10 | lactose transp. system permease prot. LacF | 107 | 05c03 | ATP-binding prot. |
| 52 | 11f10 | sugar transp. prot. | 108 | 20e03 | ATP-binding prot. |
| 109 | 19f02 | ABC transp. ATP-binding prot. | 164 | 01h09 | L-asparagine permease AnsP |
| 110 | 19d07 | ABC transp. ATP-binding prot. | 165 | 29d05 | C4-dicarboxylate transp. prot. DctA1 pNGR234a |
| 111 | 16a07 | ATP-dependent transp. | 166 | 20a10 | C4-dicarboxylate transp. prot. DctA1 pNGR234a |
| 112 | 17f05 | ABC transp. ATP-binding prot. | 167 | 20c09 | chelated iron ABCtransp. ATP-binding prot. |
| 113 | 09d03 | ABC transp. ATP-binding prot. | 168 | 29f01 | chelated iron ABCtransp. ATP-binding prot. |
| 114 | 17h02 | putrescine transp. system permease prot. | 169 | 03c12 | chelated iron transp. system membrane prot. |
| 115 | 22e01 | inner membrane prot. | 170 | 19a03 | chelated iron transp. system membrane prot. |
| 116 | 02g07 | spermidine/ putrescine transmembrane prot. | 171 | 11d07 | chelated iron transp. system membrane prot. |
| 116a | 06d04 | overlaps clone 02g07 | 172 | 26g08 | iron transp. prot. |
| 116b | 24b12 | overlaps clone 06d04 | 173 | 20e11 | phosphoenolpyruvate-prot. phosphoTase |
| 117 | 13b12 | putrescine transp. prot. | 174 | 20e12 | Na+/H+-exchanging prot. system component |
| 118 | 06d07 | putrescine transp. permease prot. | 175 | 22b06 | mannopine-binding periplasmic prot. motA |
| 119 | 09b07 | putrescine transp. permease prot. | 175a | 21g06 | overlaps clone 22b06 |
| 119a | 06b04 | overlaps clone 09b07 | 176 | 21h10 | sulfate transp. system permease prot. |
| 120 | 24a01 | glycine betaine transp. system permease prot | 177 | 29h02 | taurin-binding periplasmic prot |
| 121 | 24f03 | glycine betaine transp. system permease prot | 178 | 22d09 | cytoplasmic membrane prot. CeoB |
| 122 | 28c03 | glycine betaine / proline transp. prot. ProV | 179 | 28f12 | integral membrane prot. (sodium:sulfate symporter) |
| 123 | 10h02 | inner membrane prot. | 180 | 23g03 | sulphate transp. system permease prot. CysT |
| 124 | 03b03 | aquaporin Z (bacterial nodulin-like intrinsic prot.) | 181 | 25h07 | transp. prot., y4xM pNGR234a |
| 125 | 03c04 | arginine / ornithine antiporter | 182 | 24h07 | periplasmic binding prot. |
| 126 | 03e12 | glycerol-3-phosphate-binding periplasmic prot. | 183 | 08c01 | lipoprot. LppB/NlpD |
| 127 | 22g07 | glycerol-3-phosphate transp. prot. | 183a | 10c07 | overlaps clone 08c01 |
| 128 | 05a06 | acriflavine resistance lipoprot. A precursor | 184 | 24f12 | lipoprot. |
| 129 | 29h11 | acriflavine resistance prot. B | 185 | 23h12 | lipoprot. |
| 129a | 15d06 | overlaps clone 29h11 | 186 | 06a01 | outer membrane lipoprot. |
| 130 | 14b09 | acriflavine resistance prot. | 186a | 11a05 | overlaps clone 06a01 |
| 131 | 14c06 | antibiotic resistance prot | 186b | 21d02 | overlaps clone 11a05 |
| 131a | 05c12 | overlaps clone 14c06 | |||
| 132 | 04d08 | Leu/ Ile/ Val/ (Thr/Ala)-binding prot. precursor | Sensors (signal transduction) | ||
| 133 | 07e02 | cytoplasmic prot. CeoB | 187 | 12f09 | sensor histidine kinase ExsG |
| 134 | 01c07 | NolH (AcrB/AcrD/AcrF family prot.) | 187a | 15d09 | overlaps clone 12f09 |
| 135 | 27a10 | FixI; E1-E2 type cation ATPase | 188 | 18f03 | sensor histidine kinase ExsG |
| 136 | 12b12 | heavy-metal transp.ing P-type ATPase | 189 | 06a07 | sensor prot. TctD |
| 137 | 29f07 | cation-transp. ATPase PacS | 190 | 16d05 | sensor prot. for potassium transp. KdpD |
| 138 | 11e02 | H+/Ca2+ exchanger | 191 | 06d10 | sensor prot. for potassium transp. KdpD |
| 139 | 01g05 | tonB-dependent outer membrane heme receptor HemR | 191a | 25f03 | overlaps clone 06d10 |
| 140 | 02b10 | inner membrane prot., energy transducer TonB | 191b | 26d08 | overlaps clone 06d10 |
| 141 | 27h11 | TonB-dependent transp. ExbD | 192 | 09c11 | two-component sensor histidine kinase |
| 142 | 02b11 | nitrite extrusion prot. | 192a | 26a04 | overlaps clone 09c11 |
| 143 | 08f10 | nitrate transp. permease prot. nrtB | 193 | 10f06 | C4-dicarboxylate sensor prot. DctB |
| 144 | 16d07 | nitrate transp. prot. NrtD | 194 | 13b09 | C4-dicarboxylate sensor prot. DctB |
| 145 | 09g09 | phosphate transp. prot. PhoE | 195 | 14c01 | sensor of two-component system FlhS |
| 146 | 27h09 | phosphate transp. prot. PhoT | 196 | 01g04 | sensor of two-component system FlhS |
| 146a | 11g03 | overlaps clone 27h09 | 197 | 15f11 | prokaryotic sensory transduction prot. |
| 147 | 17e11 | phosphate transp. prot. PhoT | 198 | 15g02 | sensory transduction histidine kinase |
| 148 | 17c11 | phosphate transp. prot. Pit | 199 | 19a06 | sensory transduction histidine kinase |
| 149 | 21a10 | phosphate transp. prot. Pit linked to RIME 2 | 199a | 22d04 | overlaps clone 19a06 |
| 150 | 04d06 | Pit accessory protein orfA | 200 | 22g10 | histidine kinase sensory prot. ExoS |
| 151 | 12d06 | macrolide-efflux determinant | 201 | 23e05 | histidine prot. kinase ActS |
| 152 | 13d04 | cation efflux system prot. | 202 | 29f03 | sensor kinase NwsA |
| 153 | 17e08 | cation efflux system prot. | |||
| 154 | 21e03 | ferric siderophore receptor | Membrane bioenergetics (electron transport, etc) | ||
| 154a | 14c02 | overlaps clone 21e03 | 203 | 09f04 | pyridine nucleotide transhydrogenase sub. α PntA |
| 155 | 29b02 | ferric siderophore receptor | 204 | 02h05 | pyridine nucleotide transhydrogenase sub. α PntA |
| 155a | 18g03 | overlaps clone 29b02 | 205 | 09d11 | pyridine nucleotide transhydrogenase sub. α PntA |
| 156 | 14e12 | potassium uptake prot. Kup | 206 | 20h04 | pyridine nucleotide transhydrogenase sub. β PntB |
| 157 | 14f07 | phosphoenolpyruvate-prot. phosphoTase | 207 | 25g07 | pyridine nucleotide transhydrogenase sub. β PntB |
| 158 | 15f09 | ABC transp. ATP-binding prot. | 208 | 13b05 | FixN cytochrome CBB3 sub. 1 |
| 159 | 16d04 | molybdenum transp. prot. | 209 | 01b04 | FixN cytochrome CBB3 sub. 1 |
| 160 | 16g11 | periplasmic sulphate binding prot. Sbp | 210 | 08a07 | FixS cbb3-type cytochrome oxidase formation prot. |
| 161 | 04f12 | periplasmic sulphate binding prot. Sbp | 211 | 24d07 | cytochrome-c oxidase chain IIIB CoxP |
| 162 | 18b09 | drug efflux pump (AcrB/AcrD/AcrF family) | 212 | 05f03 | cytochrome BB3 sub. 1 CoxN |
| 163 | 18d12 | tartrate transp. TtuB | 212a | 03h10 | overlaps clone 05f03 |
| 212b | 12g07 | overlaps clone 05f03 | 268 | 13h11 | capsular polysaccharide biosynthesis prot. |
| 213 | 05f06 | cytochrome C oxidase assembly prot. CoxZ | 269 | 08c05 | spore coat polysaccharide biosynthesis prot.E |
| 214 | 05e03 | cytochrome C-type biogenesis prot. CycJ/K | 270 | 14d02 | β-(1,2)-glucans production inner-membrane prot. NdvB |
| 215 | 06d08 | cytochrome C-type biogenesis prot. CycH | |||
| 216 | 11f02 | cytochrome c-type biogenesis prot. CcdA | Mobility / chemotaxis | ||
| 217 | 12e03 | cytochrome oxidase δ, sub. II | 271 | 17a10 | (MCP)-glutamate methylesterase CheB |
| 218 | 11g05 | ubiquinol-cytochrome C RDase iron-sulfur sub. | 272 | 05c06 | flagellar basal-body (proximal) rod prot. FlgB |
| 219 | 15e06 | cytochrome o ubiquinol oxidase sub. III | 273 | 29g09 | flagellar biosynthetic prot. FlhB |
| 220 | 29e05 | cytochrome c small sub. of nitric oxide RDase | 273a | 08g10 | overlaps clone 29g09 |
| 221 | 06h06 | glycolate oxidase iron-sulfur sub. (Fe-S prot.) | 273b | 24g01 | overlaps clone 08g10 |
| 221a | 07e07 | overlaps clone 06h06 | 274 | 13b08 | flagellar biosynthetic prot. FliQ |
| 222 | 08h10 | ATP synthase α-chain | 275 | 12f06 | flagellar basal-body MS-ring prot. FliF |
| 222a | 14d10 | overlaps clone 08h10 | 276 | 14e10 | flagellar hook prot. FlgE |
| 222b | 22c06 | overlaps clone 14d10 | 277 | 14f11 | flagellar basal-body (distal) rod prot. FlgG |
| 223 | 17f07 | ATP synthase γ-chain | 278 | 17c05 | flagellar C-ring prot. FliG |
| 224 | 09a12 | NADH-ubiquinone oxidoRDase (CI-40 kDa) | 279 | 26d03 | flagellar biosynthetic prot. FliP |
| 225 | 09h02 | NADH-ubiquinone oxidoRDase (CI-51kDa) | 280 | 18g10 | flagellar basal-body rod prot. FlgF |
| 226 | 13d12 | cyanide insensitive terminal oxidase CioAB | 281 | 27a08 | flagellin prot. FlaD |
| 227 | 01g02 | NADH DHase (ubiquinone), sub. 1 | 282 | 20h07 | new class of flagellar prot. FlmD |
| 228 | 19b04 | NADH DHase | 282a | 19b08 | overlaps clone 20h07 |
| 229 | 12a01 | NADH ubiquinone oxidoRDase | 282b | 30a08 | overlaps clone 20h07 |
| 230 | 20c11 | NADH ubiquinone oxidoRDase | 283 | 07h07 | chemotactic transducer for amino acids |
| 231 | 06e08 | NADH ubiquinone oxidorRDase | 284 | 13g03 | methyl-accepting chemotaxis prot |
| 232 | 26e10 | NADH ubiquinone oxidoRDase | 285 | 11b02 | methyl-accepting chemotaxis prot |
| 233 | 08g12 | NADH ubiquinone oxidoRDase | 286 | 11c06 | methyl-accepting chemotaxis prot |
| 234 | 21h02 | NADH ubiquinone oxidoRDase | 287 | 15b10 | methyl-accepting chemotaxis prot |
| 235 | 22a06 | NADH ubiquinone oxidoRDase | 288 | 16b03 | methyl-accepting chemotaxis prot |
| 236 | 27c06 | NADH ubiquinone oxidoRDase | 289 | 16f10 | methyl-accepting chemotaxis prot |
| 237 | 24b11 | electron transfer flavoprotein-ubiquinone oxidoRDase | 290 | 28h04 | methyl-accepting chemotaxis prot |
| 238 | 25a08 | glutathione RDase | 291 | 28a12 | methyl-accepting chemotaxis prot |
| 239 | 01h05 | thioredoxin | 292 | 27f01 | chemotaxis prot. methylTase CheR |
| 240 | 29a01 | thioredoxin RDase | 292a | 15e07 | overlaps clone 27f01 |
| 241 | 16d03 | ferredoxin [2Fe-2S] II | Cell division | ||
| 242 | 19f07 | ferredoxin-type prot. [4Fe-4S] | 293 | 05f02 | cell division prot. FtsH |
| 243 | 09c06 | ferredoxin [3Fe-4S] [4Fe-4S] | 294 | 08d04 | cell division prot. FstK |
| 244 | 26a10 | ferredoxin, [2Fe-2S] | 295 | 16b04 | cell division prot. FtsK |
| 244a | 05c08 | overlaps clone 26a10 | 296 | 16e07 | septum formation prot. Maf |
| 244b | 18a04 | overlaps clone 26a10 | 297 | 25f06 | cell division inhibitor MinC |
| Surface polysaccharide - biosynthesis and export | Protein secretion | ||||
| 245 | 01c04 | ExoB UDP-galactose 4-epimerase | 298 | 14c09 | ABC transp. type I PrsD |
| 246 | 03a05 | ExoB UDP-galactose 4-epimerase | 298a | 06a04 | overlaps clone 14c09 |
| 247 | 06a08 | ExoN UDP-glucose pyrophosphorylase | 299 | 24e06 | ABC transp. type I PrsD |
| 248 | 07g05 | ExoN UDP-glucose pyrophosphorylase | 300 | 11h03 | membrane fusion prot. type I PrsE |
| 249 | 10e08 | ExoF exopolysaccharide production prot. precursor | 301 | 29e03 | membrane fusion prot. type I PrsE |
| 250 | 10c12 | ExoK endo-β-1,3-1,4-glucanase | 302 | 06h10 | general secretion pathway prot. D precursor XpsD |
| 251 | 18b08 | ExoP succinoglycan transp. prot. | 302a | 03e03 | overlaps clone 06h10 |
| 252 | 22e05 | ExoU succinoglycan biosynthesis glycosylTase | 303 | 12h06 | general secretion prot. F XcpS |
| 253 | 27h01 | ExoU succinoglycan biosynthesis glycosylTase | 303a | 10c03 | overlaps clone 12h06 |
| 254 | 18h12 | ExoY exopolysaccharide production prot. | 304 | 29d12 | general secretion prot. D GspD |
| 255 | 25h10 | ExoL succinoglycan biosynthesis glycosylTase | 304a | 12e11 | overlaps clone 29d12 |
| 256 | 17b10 | exopolysaccharide production prot. Pss | 304b | 10e05 | overlaps clone 12e11 |
| 257 | 11a12 | KPS production, fatty acid synthase RkpC | 305 | 22g03 | general secretion prot. E GspE |
| 258 | 27f08 | KPS modification / export prot. RkpI | 306 | 28g09 | pNGR234a, probable translocation prot. RhcT |
| 259 | 11d09 | KPS modification / export prot. RkpJ | 307 | 29b12 | preprotein translocase SecA sub. |
| 260 | 17h04 | polysialic acid transp. prot. KpsM | |||
| 261 | 21b04 | specialized small acyl carrier prot. (lipid A) | Chaperones | ||
| 262 | 10c11 | N-acetylglucosamine deacetylase (lipid A) | 308 | 10d03 | heat shock prot. cnp60 GroEL |
| 263 | 10b05 | 3-deoxy-D-manno-octulosonic-acid (Kdo) Tase KdtA | 309 | 21a09 | heat shock prot. cnp60 GroEL |
| 264 | 18f02 | 3-deoxy-D-manno-octulosonic-acid (Kdo) Tase KdtA | 310 | 26d02 | heat shock prot. cnp10 A GroES |
| 265 | 26h01 | 3-deoxy-manno-octulosonate cytidylylTase KpsU | 311 | 21a03 | heat shock prot. cnp60 GroEL |
| 266 | 12c02 | membrane bound galactosylTase RfpB | 312 | 07c04 | small heat shock prot. HspF |
| 267 | 08h09 | O-antigen acetylase | 313 | 14e03 | small heat shock prot. (hsp20-2) |
| 313a | 18g01 | overlaps clone 14e03 | 365 | 21f02 | mannonate DTase |
| 314 | 28f11 | 18 kd antigen2 (small heat shock prot. Hsp20 family) | 366 | 16g05 | alcohol DHase |
| 315 | 15g09 | small heat shock prot. HspE | 367 | 17c02 | phosphomannomutase AlgC |
| 316 | 17b02 | DnaJ-like heat shock chaperone prot. | 368 | 17f03 | glycogen phosphorylase |
| 317 | 01e06 | heat shock prot. 90 HtpG | 369 | 18d11 | phosphoglucomutase |
| 318 | 23g01 | heat shock prot. X HtpX | 370 | 18f01 | L-ribulose-P-4-epimerase (AraD/FucA family) |
| Cell death | 371 | 18h09 | triosephosphate isomerase | ||
| 319 | 08h11 | hemolysin-like prot. TlyC | 372 | 19d03 | starch (bacterial glycogen) synthase |
| 319a | 05b05 | overlaps clone 08h11 | 373 | 20d06 | zinc-type alcohol DHase-like prot |
| 320 | 04h12 | cyclolysin (haemolysin-adenylate cyclase toxin) | 374 | 20d08 | glutathione-dependent formaldehyde DHase |
| 321 | 22b07 | cyclolysin (haemolysin-adenylate cyclase toxin) | 375 | 20e05 | succinate DHase (iron-sulfur prot.) |
| 322 | 10b08 | cyclolysin (haemolysin-adenylate cyclase toxin) | 376 | 20h10 | tartrate DHase |
| 323 | 21g08 | cyclolysin (haemolysin-adenylate cyclase toxin) | 377 | 21b06 | lactaldehyde DHase |
| 324 | 12b07 | iron-regulated prot. (cytotoxins Ca2+ binding domain) | 378 | 02d12 | D-lactate DHase |
| 325 | 20c02 | hemolysin | 379 | 22b08 | D-lactate DHase |
| 380 | 22c08 | dihydrolipoamide acetylTase | |||
| Intermediary metabolism | 381 | 28b09 | dihydrolipoamide DHase | ||
| Metabolism of carbohydrates and related molecules | 382 | 30a11 | dihydrolipoamide DHase | ||
| 326 | 01b09 | glucose-6-phosphate isomerase | 383 | 23f06 | transketolase |
| 327 | 24c09 | glucose-6-phosphate isomerase | 384 | 23h07 | α-glucosidase |
| 328 | 18g07 | glucose-6-phosphate isomerase | 385 | 28a07 | D-mannonate oxidoreductase |
| 328a | 20e09 | overlaps clone 18g07 | 386 | 28c08 | glutathione-independent formaldehyde DHase |
| 329 | 09a03 | glyoxylate carboligase | 387 | 29a04 | y4uC, pNGR234a, aldehyde-DHase-like prot |
| 330 | 01c12 | α-ketoglutarate DHase | 388 | 29h05 | fumarate hydratase |
| 330a | 24d12 | Overlaps clone 01c12 | 389 | 30b10 | mannitol 2-DHase |
| 331 | 16g02 | acetoin:DCPIP oxidoRDase α | 390 | 05d12 | isocitrate lyase |
| 332 | 02e09 | acetoin:DCPIP oxidoRDase β | Metabolism of amino acids and related molecules | ||
| 333 | 02e11 | succinyl-coA synthetase β chain | 391 | 27a11 | α-isopropylmalate synthase LeuA |
| 334 | 03e11 | ribulose-bisphosphate carboxylase, large sub. | 392 | 27d07 | α-isopropylmalate synthase LeuA |
| 335 | 03h09 | citrate synthase | 393 | 14d11 | α-isopropylmalate synthase LeuA |
| 336 | 05b01 | L-xylulose kinase | 394 | 14b07 | 3-isopropylmalate dehydratase small sub.LeuD |
| 337 | 06c08 | dihydoxyacetone kinase | 395 | 25g10 | aspartate ammonia-lyase AspA |
| 338 | 18g08 | dihydoxyacetone kinase | 396 | 02c06 | aspartate ATase (AspC family) |
| 339 | 06g05 | lipoamide DHase E3 subunit of α-ketoacid DHase complex. | 397 | 02h01 | 5-methyltetrahydrofolate-homocysteine Tase MetH |
| 340 | 04g03 | alcohol DHase(acceptor) precursor | 398 | 06d09 | 3-dehydroquinate synthase AroD |
| 341 | 04h06 | malate DHase | 399 | 03c03 | 3-dehydroquinate synthase AroD |
| 342 | 09d09 | malate DHase | 400 | 18c04 | shikimate 5-dehydrogenase AroE |
| 343 | 07e09 | glycogen operon protein (glycosyl hydrolases family) | 401 | 28a08 | shikimate 5-dehydrogenase AroE |
| 344 | 08b07 | alcohol DHase | 402 | 02h02 | 3-dehydroquinate DTase AroQ |
| 345 | 08e03 | 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase | 402a | 20f02 | overlaps clone 02h02 |
| 346 | 13a05 | glycolate oxidase sub | 403 | 03b05 | aspartate aminoTase B |
| 347 | 09d08 | glycolate oxidase sub | 404 | 29b06 | aspartate aminoTase B |
| 348 | 10c06 | acetyl-CoA synthetase | 405 | 26d07 | aspartate aminoTase |
| 349 | 11b03 | aconitate hydratase (citrate hydro-lyase) | 406 | 11e06 | aspartate aminoTase |
| 350 | 25a09 | aconitate hydratase (citrate hydro-lyase) | 407 | 03e05 | y4sL pNGR234a, D-amino-acid DHase |
| 351 | 01b12 | 2-keto-3-deoxygluconokinase | 408 | 03g10 | adenylosuccinate Sase (IMP-aspartate ligase) PurA |
| 352 | 15a09 | ribitol kinase | 409 | 04a04 | glutamate 5 -kinase |
| 353 | 11c02 | glucose DHase (pyrroloquinoline-quinone) | 410 | 05d06 | N-acyl-L-aminoacid amidohydrolase (aminoacylase) |
| 354 | 25b01 | formaldehyde DHase (glutathione) | 411 | 05e10 | assimilatory nitrate RDase sub. NirB |
| 354a | 11c11 | overlaps clone 25b01 | 411a | 05h01 | overlaps clone 05e10 |
| 355 | 09a10 | β-glucosidase (cellulose degradation) | 412 | 05g02 | 3-isopropylmalate DTase large sub. LeuC |
| 356 | 07a05 | β-glucosidase (cellulose degradation) | 413 | 05g05 | class III pyridoxal-phosphate-dependent ATase |
| 357 | 18b12 | β-glucosidase (cellulose degradation) | 414 | 06a10 | threonine deaminase IlvA |
| 357a | 12b03 | overlaps clone 18b12 | 415 | 26f02 | threonine deaminase IlvA |
| 357b | 07f11 | overlaps 12b03 | 416 | 13g01 | acetolactate Sase (acetohydroxy-acid Sase) IlvB |
| 358 | 12c07 | NADP-dependent malic enzyme | 417 | 01b11 | acetolactate Sase (acetohydroxy-acid Sase) IlvB |
| 359 | 12g01 | phosphogluconate DHase | 418 | 08b10 | dihydroxy-acid DTase IlvD |
| 360 | 28c02 | glutathione-dependent formaldehyde DHase | 419 | 18c03 | dihydroxy-acid DTase IlvD |
| 361 | 04h08 | glycerol-3-phosphate DHase | 420 | 06b12 | histidinol DHase HisD |
| 362 | 14g01 | glycerol-3-phosphate DHase | 421 | 07a04 | N-acetylornithine ATase |
| 363 | 30f10 | glycerol-3-phosphate DHase | 422 | 07b06 | low specificity D-threonine aldolase |
| 364 | 15e12 | dTDP-glucose 4-6-DTase | 423 | 08f03 | branched-chain α-keto acid DHase component E1 |
| 424 | 30a04 | serine acetylTase (CysE/LacA/LpxA/NodL family) | 480 | 12f08 | adenylate kinase (ATP-AMP transphosphorylase) |
| 424a | 10c10 | overlaps clone 30a04 | 480a | 09b05 | overlaps clone 12f08 |
| 425 | 10e02 | anthranilate synthase (tryptophan biosynthesis) TrpE/G | 481 | 11c12 | deoxyuridine 5′ triphosphate nucleotidohydrolase |
| 426 | 30e09 | anthranilate synthase (tryptophan biosynthesis) TrpE/G | 482 | 14g07 | cytosine deaminase CodA |
| 427 | 11e05 | serine hydroxymethylTase GlyA | 483 | 05e12 | phosphoribosylformylglycinamidine synthase PurQ |
| 428 | 29h12 | tryptophan synthase TrpA | 484 | 17b06 | phosphoribosylformylglycinamidine synthase PurQ |
| 429 | 11f03 | homoserine DHase | 485 | 15f05 | formyltetrahydrofolate deformylase-like prot. PurU |
| 430 | 11h02 | 5,10-methylenetetrahydrofolate RDase MetF | 486 | 23e07 | phosphoribosylformylglycinamidine PurL |
| 430a | 15a08 | overlaps clone 11h02 | 487 | 29g10 | thymidine kinase |
| 431 | 11h04 | proline DHase PutA | |||
| 432 | 18d05 | proline DHase PutA | Metabolism of lipids | ||
| 433 | 25c05 | proline DHase PutA | 488 | 09a01 | Nod Factor fatty acyl chain modification NodG |
| 434 | 12b02 | glutaryl-CoA DHase (acyl-coA DHase. family) | 489 | 17c10 | 3-hydroxydecanoyl-acyl-carrier-prot. DTase FabA |
| 435 | 12f03 | glycine acetylTase | 490 | 03c07 | fatty oxidation complex α sub. FadB |
| 436 | 13h10 | homoserine DHase | 491 | 05h03 | 3-oxoacyl-acyl-carrier-prot. synthase I FabB |
| 437 | 14f01 | ethanolamine ammonia-lyase heavy chain EutB | 492 | 19g02 | malonyl CoA-acyl carrier prot. transacylase FabD |
| 438 | 15b01 | 2-oxoisovalerate DHase α sub. | 493 | 10b03 | 3-oxoacyl-acyl carrier prot.synthase II FabF |
| 439 | 15d01 | methionine gamma-lyase Megl | 494 | 22d03 | 3-oxoacyl-acyl carrier prot. synthase II FabF / NodE |
| 440 | 19g12 | methionine gamma-lyase MegL | 495 | 15c04 | 3-oxoacyl-acyl-carrier-prot. synthase III FabH |
| 441 | 16h06 | 4-hydroxyphenylpyruvate dioxygenase | 496 | 30f01 | enoyl-acyl-carrier-prot. Rdase (NADH) FabI |
| 442 | 19g03 | arginine deiminase ArcA | 497 | 01c09 | enoyl-CoA hydratase |
| 443 | 29h06 | arginine deiminase ArcA | 498 | 05d10 | 3-hydroxyisobutyrate DHase |
| 444 | 29c04 | ornithine cyclodeaminase ArcB | 499 | 10h05 | long-chain-fatty-acid--CoA ligase RpfB |
| 444a | 17g07 | overlaps clone 29c04 | 500 | 05g09 | acyl-coA DHase |
| 445 | 23c08 | ornithine cyclodeaminase ArcB | 501 | 15e01 | acyl-coA DHase |
| 446 | 18e07 | hydroxypyruvate RDase | 502 | 17h07 | 3-hydroxybutyryl-CoA DHase |
| 447 | 19d12 | asparagine synthetase | 503 | 19c09 | 3-hydroxybutyryl-CoA DHase |
| 448 | 19e03 | agmatine ureohydrolase SpeB | 504 | 21h04 | sulfolipid biosynthesis prot. SqdA |
| 449 | 19h06 | alanine racemase | 505 | 22d05 | sub. A of acetyl-coA carboxylase |
| 450 | 20d07 | ornithine/acetylornithine aminoTase | 506 | 01h11 | acetyl-CoA carboxylTase β-sub. |
| 451 | 21e02 | urocanate hydratase HutU | |||
| 452 | 21f08 | adenosylhomocysteinase | Metabolism of cofactors / prosthetic groups | ||
| 453 | 22d08 | adenosylhomocysteinase | 507 | 02c03 | coenzyme PQQ synthesis prot. C |
| 454 | 09b12 | phosphoglycerate DHase SerA | 508 | 05e02 | coenzyme PQQ synthesis prot. E |
| 455 | 25b12 | D-3-phosphoglycerate DHase | 508a | 03a08 | overlaps clone 05e02 |
| 456 | 22e04 | aminotripeptidase PepT | 509 | 03c06 | DNA / panthotenate metabolism flavoprot. |
| 457 | 22e08 | 4-hydroxybenzoate hydroxylase PobA | 510 | 03e04 | dihydroxybenzoate DHase EntA |
| 458 | 22h10 | chorismate mutase / prephenate dehydratase PheA | 510a | 10a12 | overlaps clone 03e04 |
| 459 | 25c08 | diaminopimelate decarboxylase LysA | 511 | 03g11 | glutathione Tase |
| 460 | 06f04 | sarcosine oxidase α SoxA | 512 | 05b08 | thiamine biosynthesis prot. ThiC |
| 461 | 25e04 | sarcosine oxidase α SoxA | 513 | 03g09 | thiamine biosynthesis prot. ThiG |
| 462 | 01e05 | sarcosine oxidase β SoxB | 514 | 05b12 | S-adenosylmethionine: 2-demethylmenaquinonemethylTase |
| 463 | 03c10 | sarcosine oxidase δ SoxD | 515 | 12e09 | cobyrinic acid a,c-diamide synthase CobB |
| 464 | 21h08 | sarcosine DHase | 516 | 11b11 | precorrin isomerase CobH |
| 465 | 26a01 | sarcosine DHase | 517 | 02b03 | cobalamin synthesis prot. CobN |
| 465a | 07f10 | overlaps clone 26a01 | 518 | 05d05 | cobalamin/porphyrin biosynthesis prot. CobS |
| 466 | 21b09 | ferredoxin-dependent glutamate Sase GltB | 519 | 28e08 | cobalamin synthesis prot. CobT |
| 467 | 24d04 | NADH-glutamate synthase small sub. GltD | 520 | 10d09 | glutathione S-Tase Gst |
| 468 | 13e08 | NADPH dependent glutamate synthase small sub. GltX | 521 | 21d03 | glutathione synthetase GshB |
| 469 | 01h06 | glutamine synthetase II GlnII | 521a | 06b03 | overlaps clone 21d03 |
| 470 | 26f03 | dihydrodipicolinate synthase DapA | 522 | 06e11 | ferrochelatase (protoheme ferro-lyase) HemH |
| 471 | 27g06 | malyl-coA lyase | 523 | 10f10 | γ-glutamyltranspeptidase precursor |
| 472 | 28b05 | argininosuccinate synthase ArgG | 524 | 10g02 | NH (3)-dependent NAD+ Sase NadE |
| 473 | 30a12 | urease accessory prot. (UreD homolog) | 525 | 11e08 | riboflavin synthase, β sub. RibH |
| 474 | 12h11 | 4-aminobutyrate aminoTase | 526 | 13e09 | pu. amino acid oxidase flavoprot. ThiO |
| 475 | 30e05 | w-aminoTase-like prot | 527 | 13e11 | 1-deoxyxylulose-5-phosphate Sase |
| 476 | 15h11 | uridylyltransferase/uridylyl-removing enzyme GlnD | 528 | 14d08 | 4-hydroxybenzoate octaprenylTase (polyprenylTase) |
| 476a | 08e06 | overlaps clone 15h11 | 529 | 18a08 | 7,8-diamino-pelargonic acid ATase (DAPA ATase) BioA |
| 477 | 01e08 | hydantoin racemase HyuE | 530 | 19b10 | dihydroneopterin aldolase (DHNA) FolB |
| 531 | 14g12 | porphobilinogen deaminase precursor HemC | |||
| Metabolism of nucleotides and nucleic acids | 532 | 20a12 | uroporphyrinogen decarboxylase HemE | ||
| 478 | 02b08 | uracil phosphoribosylTase Upp | 533 | 30c03 | NH(3)-dependent NAD(+) Sase NadE |
| 479 | 02e04 | formyltetrahydrofolate synthase FthfS | 533a | 26c07 | overlaps clone 30c03 |
| 534 | 28d07 | NH(3)-dependent NAD(+) Sase NadE | 582b | 24b02 | overlaps clone 21d09 |
| 535 | 22a09 | pyridoxal phosphate biosynthetic prot. PdxA | 583 | 15d08 | VirB4-like prot., sim. to TrbeB pNGR234a |
| 536 | 06a02 | pyridoxamine kinase | 584 | 06h12 | DNA- binding prot. HRm / HU (histone-like prot.) |
| 537 | 24d01 | glutamate 1-semialdehyde 2,1-aminomutase | |||
| 538 | 24g03 | coenzyme F390 synthetase II | RNA synthesis and modification | ||
| 539 | 26a02 | molybdopterin biosynthesis prot. | 585 | 07b10 | transcription elongation factor GreA |
| 540 | 29e04 | pantothenate synthetase PanC | 586 | 27d08 | transcription elongation factor GreA |
| 587 | 27e10 | RNA polymerase α sub. RpoA | |||
| Metabolism of phosphate | 588 | 17b03 | ribonuclease HII RnhB | ||
| 541 | 04f07 | inorganic pyrophosphatase Ppa | 589 | 02a01 | RNA polymerase β sub RpoB |
| 541a | 29c05 | overlaps clone 04f07 | 590 | 03e09 | RNA polymerase β sub RpoB |
| 542 | 25h01 | phosphonate utilization PhnJ | 591 | 06d05 | RNA polymerase β sub RpoB |
| Metabolism of rhizopine | 592 | 22h12 | RNA polymerase β sub RpoB | ||
| 543 | 05a11 | MocA oxidoreductase | 593 | 28d10 | RNA polymerase β sub RpoB |
| 544 | 07d03 | MocB rhizopine-binding prot. precursor | 594 | 16b02 | RNA polymerase β ′ sub RpoC |
| 545 | 15b08 | MocB rhizopine-binding prot. precursor | 595 | 04h05 | RNA polymerase primary sigma-70 factor RpoD |
| 546 | 19a12 | MocB rhizopine-binding prot. precursor | 596 | 03a11 | RNA polymerase sigma-E factor SigH |
| 547 | 15b06 | MocC rhizopine catabolism | 597 | 21b10 | RNA polymerase sigma-E factor SigC |
| 548 | 18c11 | MosA rhizopine biosynthesis (dihydrodipicolinate Sase) | 598 | 27f09 | RNA polymerase sigma-32 factor RpoH |
| 548a | 04a05 | overlaps clone 18c11 | 599 | 12c03 | probable sigma factor SigI |
| 549 | 11g06 | MocB opine catabolism (phosphogluconate DTase) | 600 | 25f08 | probable sigma factor |
| 600a | 25h04 | overlaps clone 25f08 | |||
| Metabolism of sulphur | 601 | 27c10 | transcription accessory prot. Tex | ||
| 550 | 29b11 | phospho-adenylylsulfate sulfoTase CysH | 602 | 25d11 | VacB ribonuclease II family |
| 551 | 17a09 | sulfite reductase (hemoprot. sub.) CysI | 603 | 24a12 | reverse transcriptase/maturase |
| Information pathways | Protein synthesis and modification | ||||
| DNA replication, restriction, modification and repair | 604 | 29h08 | GTP-binding prot. (protease) HflX | ||
| 552 | 02f12 | ribonuclease H RnhA | 605 | 01b01 | GTP-binding prot. LepA |
| 553 | 05e01 | DNA polymerase III α sub. DnaE | 605a | 20h09 | overlaps clone 01b01 |
| 554 | 28f04 | DNA polymerase ε chain DnaQ | 605b | 25g09 | overlaps clone 01b01 |
| 555 | 06d12 | DNA polymerase III sub. gamma and tau DnaZX | 606 | 01b02 | alanyl-tRNA synthetase AlarS |
| 556 | 08e04 | DNA topoisomerase IV sub. A ParC | 607 | 06a11 | cystein- tRNA ligase CysS |
| 557 | 11d02 | primosomal replication factor Y PriA | 608 | 26h03 | glycyl tRNA-synthetase chain GlyQ |
| 558 | 08g09 | DNA gyrase sub. A (DNA topoisomerase II) GyrA | 609 | 20a08 | histidyl-tRNA synthetase HisS |
| 559 | 14e01 | DNA gyrase sub. A GyrA | 610 | 21g03 | leucyl-tRNA synthase LeuS |
| 560 | 12b05 | DNA gyrase sub. A GyrA | 611 | 16h08 | lysyl-tRNA synthetase LysS |
| 561 | 23b07 | DNA gyrase sub. B GyrB | 612 | 19g05 | phenylalanyl-tRNA synthetase chain PheS |
| 562 | 29f12 | DNA gyrase sub. B GyrB | 613 | 25f01 | seryl-tRNA synthetase SerS |
| 563 | 12g08 | replication prot. RepB | 614 | 29d09 | tryptophan- tRNA ligase TrprS |
| 563a | 02d09 | overlaps clone 12g08 | 615 | 03g06 | tryptophan- tRNA ligase TrprS |
| 564 | 24g07 | DNA polymerase I. PolA | 616 | 10f04 | tyrosyl-tRNA synthetase TyrS |
| 564a | 19a01 | overlaps clone 24g07 | 617 | 22f04 | valyl-tRNA synthetase ValS |
| 565 | 01b07 | excinuclease ABC sub. A (DNA repair prot.) UvrA | |||
| 566 | 13d07 | excinuclease ABC sub. A UvrA | 617a | 01f12 | overlaps clone 22f04 |
| 567 | 21e12 | excinuclease ABC sub. A UvrA | 618 | 10b10 | 50S ribosomal prot. L2 RplB |
| 568 | 25d05 | excinuclease ABC sub. C UvrC | 619 | 10e10 | 50S ribosomal prot. L4 RplD |
| 569 | 18g04 | excinuclease ABC sub. C UvrC | 620 | 03h08 | 50S ribosomal prot. L7/ L12 RplL |
| 570 | 02a02 | excinuclease ABC sub. C UvrC | 621 | 18e03 | 50S ribosomal prot. L9 RplI |
| 571 | 18g06 | transcription-repair coupling factor Mfd | 622 | 12h01 | 50S ribosomal prot. L13 RplM |
| 572 | 04d05 | uracil-DNA glycosylase Ung | 623 | 06a03 | 50S ribosomal prot. L14 RplN |
| 573 | 07g08 | uracil-DNA glycosylase Ung | 623a | 20e04 | overlaps clone 06a03 |
| 574 | 17d05 | type I restriction-modification enzyme M sub. HsdM | 624 | 23h06 | 50S ribosomal prot. L17 RplQ |
| 575 | 23g05 | type I restriction-modification enzyme M sub. HsdM | 625 | 06c05 | 50S ribosomal prot. L21 RplU |
| 576 | 21f03 | type I restriction enzyme S sub. HsdS | 626 | 12b06 | 50S ribosomal prot. L22 RplV |
| 627 | 29f09 | 50S ribosomal prot. L33 RpmG | |||
| DNA segregation, recombination and transfer | 628 | 17a03 | 30S ribosomal prot. S1 RpsA | ||
| 577 | 10d01 | integrase/recombinase | 629 | 25d09 | 30S ribosomal prot. S1 RpsA |
| 578 | 11a04 | integrase/recombinase | 630 | 13c09 | 30S ribosomal prot. S2 RpsB |
| 579 | 14b05 | integrase/recombinase (y4qK pNGR234a) | 631 | 29h04 | 30S ribosomal prot. S3 RpsC |
| 580 | 30a10 | recombination prot. RecA | 632 | 17h03 | 30S ribosomal prot. S5 RpsE |
| 581 | 19f08 | conjugal transfer prot. TraA | 633 | 13c05 | 30S ribosomal prot. S12 RpsL |
| 582 | 21d09 | secretory prot. kinase sim. to TrbB pNGR234a | 634 | 22f07 | 30S ribosomal prot. S15 RpsQ |
| 582a | 05d11 | overlaps clone 21d09 | 635 | 02b05 | 30S ribosomal prot. S17 RpsQ |
| 636 | 12a11 | 30S ribosomal prot. S21 RpsU | 692 | 14c08 | gluconate utilization system repressor; lacI family GntR |
| 637 | 10f09 | 30S ribosomal prot. S21 RpsU | 693 | 07e11 | transcript. regulatory prot. NtaR; GntR family |
| 638 | 15f06 | ribosomal prot. L11 methylTase PrmA | 694 | 08h12 | hydrogen peroxide-inducible activator; lysR family OxyR |
| 639 | 02c08 | y4tL pNGR234a; hydrolase/ peptidase | 695 | 08c08 | ribitol operon repressor; lacI family |
| 640 | 27e11 | clp protease ATP binding sub. | 696 | 14f06 | transcript. repressor CytR; lacI family |
| 641 | 06h11 | ATP-dependent Clp protease binding sub. ClpA | 697 | 24g11 | transcript. repressor; LacI family |
| 642 | 02e07 | ATP-dependent Clp protease binding sub. ClpA | 698 | 22e09 | transcript. repressor; LacI family |
| 643 | 22f12 | ATP-dependent Clp protease binding sub. ClpA | 699 | 28g11 | transcript. repressor; LacI family |
| 644 | 02f09 | ATP-dependent protease regulatory ATPase sub. ClpB | 700 | 22b04 | transcript. repressor; LacI family |
| 645 | 13a07 | ATP-dependent protease regulatory ATPase sub. ClpB | 701 | 17g03 | catabolite control prot.; LacI family |
| 646 | 26f08 | ATP-dependent protease regulatory ATPase sub. ClpB | 702 | 18b10 | extragenic suppressor prot. SuhB |
| 647 | 04a02 | serine protease, heat shock HtrA like -prot. | 703 | 22b12 | extragenic suppressor prot. SuhB |
| 648 | 10a05 | N-carbamyl-L-amino acid amidohydrolase AmaB | 704 | 25d07 | transcript. regulator HexA; LysR family |
| 649 | 18e01 | N-carbamyl-L-amino acid amidohydrolase AmAB | 704a | 20a07 | overlaps clone 25d07 |
| 650 | 26f09 | peptide chain release factor 1 PrfA | 705 | 07c07 | transcript. regulator HexA; LysR family |
| 651 | 12a02 | peptide chain release factor 3 PrfC | 706 | 10d07 | transcript. regulator GstR; LysR family |
| 652 | 14f04 | O-sialoglycoprotein endopeptidase | 707 | 18h01 | transcript. regulator GstR; LysR family |
| 653 | 15d11 | periplasmic endopeptidase RmDEGP | 708 | 11f05 | transcript. regulator; LysR family |
| 654 | 05a07 | ATP-dependent RNA helicase HelO | 708a | 10d08 | overlaps clone 11f05 |
| 655 | 16f11 | ATP-dependent RNA helicase HelO | 709 | 05e08 | transcript. regulator y4mQ pNGR234a; LysR family |
| 656 | 21f01 | translation elongation factor EF-Tu | 709a | 16c06 | overlaps clone 05e08 |
| 657 | 29d04 | translation elongation factor EF-Tu | 710 | 07c01 | LysR-type β-lactamase transcriptional regulator |
| 658 | 23f05 | translation elongation factor EF-G | 711 | 26d11 | LysR-type β-lactamase transcriptional regulator |
| 659 | 28d12 | translation elongation factor EF-Ts | 712 | 26g10 | transcriptional regulator; LysR family |
| 660 | 23b05 | ATP-dependent Lon protease | 713 | 20b04 | transcriptional regulator TrpI; LysR family |
| 661 | 01h03 | L-isoaspartyl protein carboxyl methylTase | 714 | 21c12 | transcriptional regulator TrpI; LysR family |
| 662 | 26c02 | aminoacyl-histidine dipeptidase PepD | 715 | 21f05 | sigma-54 dependent transcript. activator 4_Rme |
| Regulatory functions | 716 | 22a01 | transcriptional modulator MgpS | ||
| 663 | 05e05 | exoenzyme regulatory prot. AepA | 717 | 22a05 | transcriptional regulator ChvI |
| 664 | 07e12 | MucR transcriptional regulatory prot.; Ros/mucR family | 717a | 26f05 | overlaps clone 22a05 |
| 664a | 16e11 | overlaps clone 07e12 | 718 | 22d06 | Lrp-like transcript. regulatory4sM pNGR234a |
| 665 | 29a08 | SyrB (syrM repressor, sim.to y4aN, pNGR234a) | 719 | 22g04 | leucine-responsive regulatory prot. |
| 666 | 07f06 | sugar fermentation stimulation prot. | 720 | 24d06 | phosphoTase enzyme II, A PtsN, nitrogen regulation |
| 667 | 08f09 | two-component response regulator | 721 | 25c01 | cell division response regulator DivK |
| 668 | 25g06 | transcript. regulator; XylS/AraC family | 722 | 27c07 | response regulator PleD |
| 669 | 15g01 | transcript. regulator; XylS/AraC family | 723 | 25d04 | transcript. regulatory4tD pNGR234a ; AsnC family |
| 670 | 09g10 | transcript. regulator of NodD3, sim. to y4fK pNGR234a | 724 | 28b08 | LacI-GalR family of regulators, e.g. PckR |
| 671 | 19c04 | transcript. regulator of NodD3, sim. to y4fK pNGR234a | Other categories | ||
| 672 | 11c01 | transcript. regulator GlxA; XylS/AraC family | Adaptation to atypical conditions and protection | ||
| 672a | 17g08 | overlaps clone 11c01 | 725 | 02b01 | nodulation competitiveness prot. NfeD |
| 673 | 10d05 | DNA-binding prot., sim. to y4wC/y4aM pNGR234a | 726 | 16b08 | choline DHase (osmoregulation) BetA |
| 674 | 06c07 | adenylate cyclase CyaA | 727 | 26e09 | choline DHase (osmoregulation) BetA |
| 675 | 10h04 | adenylate cyclase CyaA | 728 | 19c10 | betaine aldehyde DHase (osmoregulation) BetB |
| 675a | 17b12 | overlaps clone 10h04 | 729 | 06h05 | choline sulfatase (osmoregulation) BetC |
| 676 | 27b01 | transcript. regulator of sensory transduction systems | 729a | 08c12 | overlaps clone 06h05 |
| 676a | 13f09 | overlaps clone 27b01 | 730 | 09g04 | choline sulfatase (osmoregulation) BetC |
| 677 | 02e03 | phosphate regulatory prot. PhoB | 731 | 13g02 | betaine-aldehyde DHase (osmoregulation) |
| 678 | 01d05 | phosphate regulatory prot. PhoU | 732 | 04f08 | acid tolerance ActA prot. |
| 679 | 03f08 | pyruvate Dhase complex repressor | 733 | 08c02 | copper resistance prot. precursor (detoxification) |
| 680 | 03g07 | regulatory prot. PcaR | 734 | 10f07 | catalase (detoxification) |
| 681 | 05a10 | catabolite control prot. A CcpA | 735 | 29c08 | epoxide hydrolase (detoxification) |
| 682 | 08d09 | acetate repressor prot.; IclR family | 736 | 29e02 | peroxidase / catalase (detoxification) |
| 683 | 09b11 | FixK regulator | 736a | 22g02 | overlaps clone 29e02 |
| 684 | 28b10 | GacA (FixJ-like) response regulator; LuxR/UhpA family | 737 | 19f11 | cytochrome P450 (detoxification) |
| 685 | 14c12 | two-component response regulator; LuxR family | 738 | 24b03 | nickel resistance prot. NreB |
| 686 | 17g10 | transcript. regulator y4qH pNGR234a, LuxR family | 739 | 24d08 | ice nucleation prot. (cold adaptation) |
| 687 | 28c10 | NifR3-like regulator | 740 | 11f07 | ice nucleation prot. (cold adaptation) |
| 688 | 14d06 | transcript. regulatory prot. (two-component system) | 741 | 10a08 | poly-β-hydroxybutyrate polymerase PhbC |
| 689 | 14h07 | transcript. activator prot. | 742 | 24f07 | poly-β-hydroxybutyrate polymerase PhbC |
| 690 | 15c11 | transcript. regulator | 743 | 14g10 | poly-β-hydroxybutyrate polymerase PhbC |
| 691 | 20d01 | transcript. regulator; GntR family | 744 | 12a10 | survival prot. SurE |
| 691a | 15f07 | overlaps clone 20d01 | 745 | 28e06 | biotin-regulated prot. BioS |
| 746 | 15b05 | 6′-aminoglycoside (kanamycin 6′)-N-acetylTase AacA | 793 | 28c01 | bacteriophage P22 DNA packaging prot. GP2 |
| 747 | 19d11 | arsenate reductase (arsenical pump modifier) ArsC | 794 | 15a01 | phage T7 internal virion prot. D |
| 748 | 05a05 | 5′-hydroxystreptomycin biosynthesis prot. StrU | |||
| 749 | 28e07 | haloperoxidase | Miscellaneous | ||
| 795 | 27b07 | siroheme synthetase-like prot. CysG | |||
| Transposon-related functions | 796 | 09h11 | indoleacetamide hydrolase (auxin biosynthesis) | ||
| 750 | 25f04 | ATP-binding prot. y4bM/kI/tA pNGR234a NGRIS-3 | 797 | 16e08 | 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase HpcH |
| 751 | 26c12 | ATP-binding prot. y4bL/kJ/tB pNGR234a NGRIS-3 | 798 | 18c10 | NifS-like prot. |
| 752 | 22b05 | y4bA/pH pNGR234a NGRIS-4 | 799 | 12h07 | serine/threonine prot. phosphatase |
| 753 | 06e03 | y4bA/pH pNGR234a NGRIS-4 | 800 | 29f06 | y4vD pNGR234a, peroxiredoxin 2 family |
| 753a | 26e03 | overlaps clone 06e03 | 801 | 22b03 | y4wM pNGR234a, possible binding-prot |
| 754 | 11c03 | y4bA/pH pNGR234a NGRIS-4 | 802 | 14c03 | MelA, melanin synthesis; 4HPPD family |
| 755 | 29f05 | y4bA/pH pNGR234a NGRIS-4 | 803 | 14a03 | aldehyde DHase |
| 756 | 12a08 | y4bB/pI pNGR234a NGRIS-4 | 804 | 07d01 | aldehyde DHase |
| 757 | 07a07 | y4bC/pJ pNGR234a NGRIS-4 | 805 | 02f01 | aldehyde DHase |
| 757a | 20b11 | overlaps clone 07a07 | 806 | 05g03 | aldehyde DHase |
| 758 | 11a02 | y4bD/pK pNGR234a NGRIS-4 | 807 | 03e10 | aldehyde DHase |
| 759 | 23f01 | y4ba/pH pNGR234a (NGRRS-1a left) NGRIS-4 | 808 | 07c02 | aldehyde DHase |
| 760 | 02e12 | transposase y4jA/nE/sE pNGR234a NGRIS-5 | 809 | 12h02 | betaine / aldehyde DHase |
| 761 | 11d01 | ISRm2011-2 transposase (IS630-Tc1 family) | 810 | 09h07 | betaine / aldehyde DHase |
| 762 | 06d03 | ISRm2011-2 transposase (IS630-Tc1 family) | 811 | 29b08 | oxidoRDase, sim. to various polyketide synthase |
| 763 | 17c03 | ISRm2011-2 transposase (IS630-Tc1 family) | 812 | 14h02 | molybdenum-containing aldehyde oxidoRDase |
| 763a | 28d04 | overlaps clone 17c03 | 813 | 01e11 | oxidoRDase (short-chain type DHase/ RDase) |
| 764 | 03f02 | transposase IS1380 | 814 | 06g07 | oxidoRDase (short-chain type DHase/ RDase) |
| 765 | 25h02 | transposase IS1380 | 815 | 18d03 | y4eL pNGR234a, short-chain type DHase/ RDase |
| 765a | 17f06 | overlaps clone 25h02 | 816 | 06b08 | short-chain DHase homolog |
| 766 | 05h02 | transposase IS1594 | 817 | 24c07 | oxidoRDase |
| 767 | 17h11 | transposase IS200 | 818 | 16c05 | oxidoRDase |
| 768 | 26g05 | ATP-binding prot. y4iQ/nD/sD pNGR234a NGRIS-5 | 819 | 12g04 | oxidoRDase |
| 769 | 17e12 | IS1248b orf1; sim. to frag. fs4 pNGR234a NGRIS-9 | 820 | 07f05 | NADH-dependent flavin oxidoRDase |
| 770 | 13h02 | IS869 orf1; sim. to frag. fs4 pNGR234a NGRIS-9 | 821 | 04e11 | NADH-dependent flavin oxidoRDase |
| 771 | 07h02 | transposase y4sN pNGR234a NGRIS-9 | 822 | 18a09 | 2-hydroxyacid DHase |
| 772 | 28h05 | IS427 orf4; sim. to y4sN pNGR234a | 822a | 21c10 | overlaps clone 18a09 |
| 773 | 18e04 | transposase IS870.1 | 823 | 11b06 | chlorophenol-4-monooxygenase component 1 |
| 774 | 19e10 | RFRS9 25 kDa prot. | 824 | 09b01 | phenylacetic acid degradation prot. |
| 774a | 04e10 | overlaps clone 19e10 | 825 | 12c05 | phenylacetic acid degradation prot. |
| 775 | 15d07 | transposase y4bF pNGR234a | 826 | 24g08 | phenylacetic acid degradation prot. |
| 776 | 18f10 | transposase y4qJ pNGR234a | 827 | 09b09 | export prot. |
| 776a | 06d11 | overlaps clone 18f10 | 828 | 16h05 | potential multicopper oxidase |
| 777 | 18c09 | transposase y4qJ pNGR234a | 829 | 24h11 | 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase |
| 777a | 22a11 | overlaps clone 18c09 | 830 | 26d12 | 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase |
| 778 | 17g01 | IS110 family transposase y4uE pNGR234a | 831 | 09a06 | ferredoxin RDase (naphthalene conversion) |
| 779 | 25e06 | IS110 family transposase y4uE pNGR234a | 832 | 11f11 | Carboxymuconolactone decarboxylase |
| 780 | 28g06 | IS110 family transposase y4uE pNGR234a | 833 | 07b07 | biotin / pyruvate carboxylase |
| 781 | 11d04 | IS110 transposase/integrase (C-term) | 834 | 22h07 | GTP-binding prot |
| 782 | 02e10 | H- repeat associated prot. | 835 | 22b09 | L-sorbose DHase (GMC oxidoRDase family) |
| 783 | 27d02 | H- repeat associated prot. | 836 | 10e01 | L-sorbose DHase (GMC oxidoRDase family) |
| 784 | 06e10 | IS-related y4hQ | 837 | 02d05 | L-sorbose DHase FAD dependent |
| 785 | 26h04 | IS-related y4hQ | 838 | 24c08 | carbon monoxide DHase medium sub. |
| 786 | 12b01 | IS-related y4hP | 839 | 22f10 | D-arabino 3-hexulose 6-P formaldehyde lyase |
| 787 | 12e04 | IS-related y4qI | 840 | 27e05 | NADH-dependent DHase homolog |
| 787a | 11h07 | overlaps clone 12e04 | 841 | 28b07 | molybdenum-containing quinoline 2-oxidoRDase |
| 788 | 30b11 | IS-related y4qI | 842 | 20e01 | DHase sub. precursor |
| 788a | 05h12 | overlaps clone 30b11 | 843 | 20g03 | pterin-4a-carbinolamine DTase |
| 789 | 04d03 | IS-related y4gE | 844 | 21d04 | contains hemolysin-type calcium-binding domain |
| 790 | 20b02 | IS-related y4rI | 845 | 16e10 | sulfate-starvation induced prot |
| 790a | 25d08 | overlaps clone 20b02 | |||
| Unknown proteins of: (primary accession number) | |||||
| Phage-related functions | Escherichia coli | ||||
| 791 | 12h09 | symbiosis island integrase (phage P4 family) | 846 | 15g10 | P77388 |
| 791a | 12h08 | overlaps clone 12h09 | 847 | 02a07 | P32683 |
| 792 | 17b04 | bacteriophage P22 DNA packaging prot. GP2 | 848 | 02a09 | P33362 |
| 792a | 06h08 | overlaps clone 17b04 | 849 | 03e01 | P45528 |
| 850 | 03h01 | P76631 | 908 | 28a02 | P96267 |
| 851 | 05g07 | P76481 | 909 | 08e12 | Q50709 |
| 852 | 06h04 | P75774 | 910 | 22g11 | Q11157 |
| 853 | 07f09 | P37007 | 911 | 10f08 | O69646 |
| 854 | 07h06 | Q46890 | 912 | 11a08 | O07756 |
| 855 | 08b02 | P21498 | 913 | 15c10 | O06378 |
| 856 | 08b06 | BAA14942 | 914 | 16f03 | P95223 |
| 857 | 08d12 | P39333 | 915 | 18e10 | P96914 |
| 858 | 13e12 | P76641 | 916 | 21g05 | P72043 |
| 858a | 09c08 | overlaps clone 13e12 | 917 | 25f02 | P95223 |
| 859 | 10a03 | P45568 | 918 | 29h03 | O53720 |
| 860 | 10d02 | P37675 | |||
| 861 | 10d04 | P42901 | Bacillus subtilis | ||
| 862 | 10f12 | P76481 | 919 | 16d09 | O34932 |
| 863 | 12c11 | P45475 | 919a | 02a06 | overlaps clone 16d09 |
| 864 | 12g02 | AAC75037 | 920 | 05a01 | P94437 |
| 865 | 15e04 | P52049 | 920a | 05g06 | overlaps clone 05a01 |
| 866 | 15f04 | P77748 | 921 | 06c04 | P94937 |
| 867 | 16f04 | BAA31826 | 922 | 06e01 | AAB72069 |
| 868 | 17c04 | P23522 | 923 | 04h03 | O32272 |
| 869 | 18g09 | AAA83544 | 924 | 07f08 | AAB35255 |
| 870 | 18h06 | AAC74284 | 925 | 08a08 | BAA06611 |
| 871 | 18h11 | P77368 | 926 | 17e06 | BAA23396 |
| 872 | 19h07 | P77165 | 927 | 19c11 | P54724 |
| 873 | 20a06 | P37619 | 928 | 11d08 | P54178 |
| 874 | 22d02 | AAC74824 | 929 | 11b08 | P39640 |
| 875 | 22e07 | AAC44004 | 929a | 08g04 | overlaps clone 11b08 |
| 876 | 22f08 | P33362 | 930 | 11f08 | P96683 |
| 877 | 25f09 | P76397 | 931 | 09c03 | P42966 |
| 878 | 28e04 | P76397 | 932 | 17f04 | O34398 |
| 879 | 25f10 | P77470 | 933 | 24b07 | P35155 |
| 880 | 26e05 | AAC74522 | 934 | 18c06 | O05220 |
| 881 | 27a05 | AAC75727 | 935 | 24d11 | Q07835 |
| 882 | 27e02 | P39829 | 936 | 13a01 | O07618 |
| 883 | 09c12 | P37053 | 937 | 25a06 | P37508 |
| 884 | 28f07 | AAC75038 | 938 | 21a05 | Q45584 |
| 885 | 17d02 | P77391 | 938a | 12b10 | overlaps clone 21a05 |
| 886 | 24f10 | P76235 | |||
| 887 | 28f08 | P76235 | Synechocystis sp. | ||
| 888 | 28a06 | P39338 | 939 | 04a01 | BAA17151 |
| 889 | 30e08 | P08367 | 940 | 06c03 | BAA17443 |
| 890 | 27c11 | P77165 | 941 | 04h11 | BAA18318 |
| 891 | 02b12 | P75844 | 942 | 09g07 | BAA18319 |
| 892 | 24h06 | P77334 | 943 | 13c07 | BAA18330 |
| 893 | 22h02 | P46854 | 944 | 08e11 | BAA16904 |
| 893a | 21d08 | overlaps clone 22h02 | 945 | 08f05 | BAA17017 |
| 946 | 10e06 | BAA17950 | |||
| Mycobacterium tuberculosis | 947 | 10f05 | BAA16766 | ||
| 894 | 02h04 | O05841 | 948 | 15h10 | BAA18186 |
| 895 | 02h08 | O06320 | 949 | 25e03 | AAB41278 |
| 950 | 26c01 | P72872 | |||
| 895a | 08h06 | overlaps clone 02h08 | 950a | 11h09 | overlaps clone 26c01 |
| 896 | 03d06 | O05865 | 951 | 29a07 | BAA10710 |
| 897 | 04f10 | O53858 | 952 | 01c06 | BAA10835 |
| 898 | 04h01 | O06804 | |||
| 899 | 07e03 | P71838 | Haemophilus influenzae | ||
| 900 | 19b02 | Q10846 | 953 | 01c01 | P44250 |
| 901 | 19f01 | P96814 | 954 | 01e07 | P31777 |
| 902 | 20c01 | O50466 | 955 | 06b02 | Q57151 |
| 903 | 24h02 | O07220 | 956 | 13a08 | P44093 |
| 904 | 25a05 | O06235 | 957 | 25h09 | P44886 |
| 905 | 25b06 | P71984 | 958 | 01h02 | P44540 |
| 906 | 25h05 | O53203 | 959 | 22c12 | P44543 |
| 907 | 27h05 | Q10849 | 960 | 19a07 | Q57184 |
| Agrobacterium sp. | 1005 | 07d10 | Q58322 | ||
| 961 | 03a07 | AAB91569 | 1006 | 05a02 | Q57883 |
| 962 | 05f01 | AAB67296 | 1006a | 29e09 | overlaps clone 05a02 |
| 963 | 28b11 | AAB67297 | 1006b | 17d09 | overlaps clone 05a02 |
| 964 | 06b11 | AAB51512 | 1007 | 06f06 | Q46063 |
| 965 | 19e06 | AAC17194 | 1008 | 07b09 | AAB50572 |
| 966 | 09h12 | AAB67297 | 1009 | 02h03 | AAB50572 |
| 967 | 17e09 | P70791 | 1009a | 12e05 | overlaps clone 02h03 |
| 968 | 16h09 | P70795 | 1010 | 04e08 | AAC46053 |
| 969 | 01g12 | P70795 | 1011 | 28h08 | AAC46056 |
| 970 | 22b02 | P70795 | 1012 | 19f10 | AAA96787 |
| 1013 | 10g08 | BAA29686 | |||
| Rhizobia | 1014 | 02g03 | BAA29099 | ||
| 971 | 17f01 | P55362 | 1014a | 13b10 | overlaps clone 02g03 |
| 972 | 30f11 | P55362 | 1015 | 11g07 | AAC82835 |
| 973 | 16c11 | P55388 | 1016 | 17e05 | P46378 |
| 974 | 30e04 | P55424 | 1017 | 17h12 | AAB51777 |
| 975 | 27b10 | P55480 | 1018 | 18a11 | CAA55879 |
| 976 | 10b09 | P55552 | 1019 | 18h10 | AAB66497 |
| 977 | 12g11 | P55552 | 1020 | 19f09 | AAB85316 |
| 978 | 29e06 | P55552 | 1021 | 19f12 | O52867 |
| 979 | 11d10 | P55590 | 1021a | 23b03 | overlaps clone 19f12 |
| 980 | 07c10 | P55694 | 1022 | 21a11 | AAB38705 |
| 981 | 20h08 | P55706 | 1023 | 21d12 | AAB09035 |
| 982 | 02g08 | P25893 | 1024 | 12d11 | AAD03878 |
| 983 | 11f12 | P49305 | 1025 | 21a04 | AAC44077 |
| 984 | 14b08 | AAB63673 | 1026 | 22f06 | AAD03845 |
| 985 | 16b12 | AAA74241 | 1027 | 16d06 | AAD03912 |
| 986 | 16f09 | AAA74241 | 1028 | 22g06 | P70734 |
| 987 | 16c07 | AAB4153 | 1029 | 22h06 | AAC46243 |
| 988 | 09g03 | Q52991 | 1030 | 05d03 | AAC06984 |
| 989 | 07h12 | P25893 | 1030a | 06d06 | overlaps clone 05d03 |
| 990 | 22h03 | AAA88525 | 1031 | 24b01 | AAC07457 |
| 991 | 25c11 | Q52967 | 1032 | 30a07 | AAC06721 |
| 992 | 25g03 | AAB81416 | 1033 | 01a12 | P38102 |
| 993 | 20a04 | CAA11961 | 1034 | 24d02 | P55176 |
| 994 | 30e03 | CAB01954 | 1035 | 28e05 | P29938 |
| 995 | 20g09 | AAC64871 | 1036 | 09c10 | AAC44553 |
| 996 | 04f06 | AAB17515 | 1037 | 26a12 | AAB89525 |
| 997 | 22h04 | AAB17515 | 1038 | 27f04 | AAC34291 |
| 998 | 19e07 | AAB17514 | 1039 | 29c07 | C36925 |
| 999 | 05f08 | AAA96138 | 1040 | 29d11 | Q49092 |
| 1000 | 24e08 | O69244 | 1041 | 11d06 | Q15595 |
| 1041a | 07a02 | overlaps clone 11d06 | |||
| Other organisms | 1041b | 23g10 | overlaps clone 11d06 | ||
| 1001 | 19a11 | AAC16153 | 1042 | 06h07 | P40896 |
| 1002 | 28a01 | AAC16139 | 1043 | 24d09 | P34227 |
| 1003 | 22d01 | P30790 | 1043a | 15f12 | overlaps clone 24d09 |
| 1004 | 03g04 | Q06373 | 1043b | 18f08 | overlaps clone 15f12 |
Abbreviations: No, number; prot., protein; sim., similar; sub, subunit; transcript., transcriptional; transp., transport; ATase, aminotransferase; CoA, coenzyme A; DHase, dehydrogenase; DTase, dehydratase; RDase, reductase; Sase, synthase; Tase, transferase; TGase, transglycosylase.