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. 2003 Jun;69(6):3580–3592. doi: 10.1128/AEM.69.6.3580-3592.2003

TABLE 3.

Summary of archaeal 16S rRNA clone sequences from Finn Z1 to Z3

Phylogenetic group Clone(s)a Closest match (accession no.)b Similarityc No. of clonesd
Z1a Z2a Z2b Z3a Z3b
Korarchaeota FZ2bA214 pOWA133 (AB007303) 0.94 1
Crenarchaeota
    Marine group I FZ1aA3, FZ1aA5, FZ1aA6, FZ1aA14, FZ1aA67, FZ1aA159, FZ1aA160, FZ1aA163, FZ2aA59, FZ2bA18, FZ2bA16, FZ2bA30, FZ2bA64, FZ2bA101, FZ2bA206 JTB167 (AB015275) 0.94-0.97 17 6 20 1 9
    UCI FZ1aA18, FZ1aA60, FZ2bA20, FZ3aA1, FZ3aA20, FZ3bA114 SUBT-14 (AF361211) 0.84-0.92 6 15 1 22 29
    UCIIa FZ2bA12, FZ2bA54, FZ2bA108 20a-6 (AJ299151) 0.91-0.93 11
    UCIIb FZ2aA56, FZ2bA4 20a-6 (AJ299151) 0.93-0.94 1 1
    UCIII FZ2bA61, FZ3aA130 pISA9 (AB019732) 0.84-0.88 1 1
    Thermoproteales FZ2aA55 GBa2r048 (AF419633) 0.93 1
    UCIV FZ2bA53, FZ2bA211, FZ2bA221 pJP89 (L25305) 0.87-0.89 4
Euryarchaeota
    UEI FZ1aA12, FZ1aA168, FZ2aA72, FZ2bA36, FZ2bA106, FZ2bA167, FZ3bA23 CRA13-11 (AF119124) 0.84-0.96 20 6 11 3 4
    UEII FZ1aA158, FZ2aA51, FZ2bA26, FZ2bA42, FZ2bA63, FZ2bA121, FZ2bA105 G26_C49 (AF356632) 0.78-0.83 4 4 9
    UEIIIa FZ1aA166, FZ2bA110 DOUR010 (AF201364) 0.73-0.76 1 1
    UEIIIb FZ2bA11, FZ2bA69 pMC2A17 (AB019747) 0.72-0.75 2
    UEIV FZ2aA5, FZ2bA3, FZ2bA112, FZ2bA217 pMC2A24 (AB019736) 0.83-0.87 1 3
    Methanosarcinales FZ2bA17, FZ2bA209 ARB5 (AF293016) 0.85-0.93 4
    Methanococcales FZ3aA10 33-P62-A98 (AF355922) 0.96 1
    Palaeococcus type FZ2bA58, FZ2bA113 GR-1 (AF069725) 0.94-0.95 3
    Thermococcales FZ3aA26, FZ3aA31, FZ3bA104 T. celer (M21529) 0.93-0.99 2 1
    Archaeoglobales FZ2aA25 pMC2A228 (AB019735) 0.98 1
a

Representative 16S rRNA sequence(s) used in phylogenetic analyses, based upon 97% similarity grouping.

b

Clone name (GenBank accession number) based upon the results of a BLAST search (NCBI).

c

Based upon the results from a similarity matrix of unambiguously aligned nucleotides. A value of 1.00 indicates that sequences are identical.

d

The total numbers of clones analyzed for Z1a, Z2a, Z2b, Z3a, and Z3b were 48, 35, 72, 30, and 43, respectively. The numbers of different phylotypes were 21, 16, 35, 11, and 7, respectively.

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