Table II.
Wound-regulated genes involved in putative defense mechanisms
| Putative Function | Accession No. | Folda
|
|
|---|---|---|---|
| W0.5b | W6 | ||
| Pathogenesis-related genes | |||
| Similar to NDR1/HIN1-like protein 3 | AAC77866 | 18.02 | |
| Similar to Hs1pro-1 | AAB95285 | 12.08 | |
| Similar to regulatory protein NPR1 | CAA19683 | 5.07 | |
| Similar to Mlo proteins | AD25552 | 4.51 | |
| Putative lectin like protein | AAC27148 | 3.88 | |
| Non-race-specific disease resistance protein (NDR1) | AAB95208 | 3.71 | |
| Similar to Avr9/Cf-9 rapidly elicited protein 137 | AAD25764 | 3.69 | |
| Resistance protein RPP5-like | CAA16929 | 2.47 | |
| Disease resistance protein RPP1-WsC | AAC72979 | 2.13 | |
| Similar to Mlo proteins | AAC28997 | 14.03 | |
| Similar to disease resistance protein Cf-2.2 | AAC12833 | 4.88 | |
| Putative disease resistance protein | AAD26901 | 4.44 | |
| AIG1, disease resistance protein | AAC49282 | 3.66 | |
| Disease resistance RPP5 like protein | CAB10461 | −3.77 | |
| Putative β-1,3-glucanase | AAD15611 | 3.61 | |
| β-1,3-glucanase-like protein | CAA16806 | 2.12 | |
| Putative β-1,3-glucanase | CAA18827 | −2.61 | |
| Putative endochitinase | AAB64044 | 16.35 | |
| Class IV chitinase | CAA74930 | 8.42 | |
| Putative endochitinase | AAB64049 | 2.79 | |
| Similar to class I chitinases | AAC72865 | 2.26 | |
| Putative antifungal protein, AFP3_ARATH | AAC31244 | −2.78 | −2.15 |
| Thaumatin-like protein, PR-5 | AAF21072 | −2.08 | |
| Putative protease inhibitor | AAC79626 | 4.59 | |
| Putative trypsin inhibitor | AAB64325 | 4.13 | |
| Oxidative burst | |||
| Peroxidase ATP24a | CAA72484 | 15.41 | |
| Peroxidase ATP15a | CAA67551 | 5.25 | 11.75 |
| Respiratory burst oxidase protein D | AAC39479 | 4.81 | |
| Putative l-ascorbate oxidase | CAA18769 | 2.71 | |
| CTF2B, similar to monooxygenase 2 | AAD09952 | 2.51 | |
| GA 2-oxidase | CAB41008 | 2.07 | 2.31 |
| Similar to glutathione S-transferase | AAD32888 | 5.91 | |
| Putative glutathione S-transferase | AAC95194 | 5.45 | |
| Peroxidase ATP2a | CAA66863 | 3.46 | |
| Putative p-hydroxyphenylpyruvate dioxygenase | AAF24813 | 3.33 | |
| Putative glutathione S-transferase | AAC95192 | 3.28 | |
| Similar to aldehyde reductase | AAC62136 | 3.22 | |
| Glutathione S-transferase | CAA74639 | 2.72 | |
| Putative amine oxidase | AAD22129 | 2.67 | |
| Putative copper amine oxidase | AAD23730 | 2.23 | |
| Putative ferredoxin | AAD15602 | 2.21 | |
| Putative glutathione S-transferase | AC95196 | 2.11 | |
| Glutathione reductase | AAB67841 | 2.07 | |
| Catalase 3 | AAC49807 | −3.27 | |
| Cytochrome P450 | |||
| Putative cytochrome P450 | AAC02748 | 6.31 | |
| Putative cytochrome P450 | AAB87109 | 6.25 | |
| Putative cytochrome P450 | AAC06158 | 4.22 | |
| Cytochrome P450 monooxygenase | BAA28534 | −2.21 | |
| Phenylpropanoid biosynthesis | |||
| Putative leucoanthocyanidin dioxygenase | AAC27173 | 13.66 | |
| Cinnamyl-alcohol dehydrogenase ELI3-2 | CAB37539 | 11.75 | |
| Similar to cinnamyl alcohol dehydrogenase | AAC33210 | 8.89 | |
| Cinnamyl alcohol dehydrogenase-like protein | CAA17549 | 8.31 | |
| Putative cinnamoyl-CoA reductase | AAB80681 | 2.49 | |
| Putative chorismate mutase/prephenate dehydratase | AAC73018 | −2.13 | |
| Flavonoid 3′,5′-hydroxylase-like protein | CAB45977 | −6.83 | |
| TRP pathway | |||
| Phosphoribosylanthranilate isomerase | AAD38141 | 2.72 | |
| Strictosidine synthase | AAB40594 | 2.67 | |
| TRP synthase α-chain | AAC49117 | 2.11 | |
| Anthranilate synthase, α-subunit | AAC35228 | 2.05 | |
| Anthranilate N-benzoyltransferase-like protein | AAB95283 | −2.14 | 2.01 |
| Putative chorismate mutase/prephenate dehydratase | AAC73018 | −2.13 | |
| Berberine biosynthesis | |||
| Putative berberine bridge enzyme | AAD25759 | 6.51 | 9.25 |
| Berberine bridge enzyme-like protein | CAB42588 | 2.61 | 6.14 |
| Berberine bridge enzyme-like protein | CAB45881 | 2.32 | 3.27 |
| Tyr transaminase-like protein | CAA23026 | 2.55 | |
| Putative berberine bridge enzyme | AAC12821 | 2.54 | |
| Putative Tyr transaminase | AAD23027 | 2.08 | |
| Cell wall modification | |||
| Xyloglucan endotransglycosylase-related protein | AAB18367 | 10.50 | |
| Xyloglucan transglycosylase-related protein (TCH4) | AAC05572 | 4.08 | 2.18 |
| Similar to TCH4 gene | AAC27142 | 4.06 | |
| Similar to xyloglucan fucosyltransferase FT1 | AAD22285 | 3.91 | |
| Glycosyltransferase-like protein | CAB62445 | 2.46 | |
| Putative glucosyltransferase | AAC16958 | 3.13 | |
| Putative glucosyltransferase | AAB64024 | 2.96 | |
| Putative xyloglucan endotransglycosylase | AAD31572 | 2.19 | |
| Similar to pectinesterase | AAC19280 | 3.37 | 3.41 |
| Putative pectin methylesterase | AAC02974 | 3.11 | 4.01 |
| Pectinesterase 1 | AAF02857 | 2.39 | |
| Similar to pectinesterase | CAB51210 | 16.91 | |
| Putative pectinesterase | AAB82640 | 3.35 | |
| Putative pectin methylesterase | AAC02973 | 2.26 | |
| Putative pectate lyase | CAA22985 | −2.28 | |
| Cellulose synthase isolog | AAB63623 | 4.88 | |
| Cellulose synthase like protein | CAB10434 | −2.01 | 2.23 |
| UDP-Glc 4-epimerase-like protein | CAB45812 | 11.61 | |
| Putative UDP-galactose-4-epimerase | AAD25749 | 2.18 | 2.15 |
| Extensin-like protein | CAA22152 | 13.41 | |
| Extensin like protein, pEARLI 1 | CAB41718 | −2.03 | 4.74 |
| pEARLI 1-like protein | CAB41717 | 6.11 | |
| Expansin At-EXP1 | AAB38070 | −2.16 | |
| Putative expansin | AAB87577 | −3.29 | |
| Gly-rich protein | AAA32722 | 12.70 | |
| Putative Pro-rich protein | AAD29802 | 2.62 | |
| Gly-rich RNA-binding protein AtGRP2 like | CAB36849 | −2.44 | |
| Gly-rich protein, atGRP-2 | AAB24074 | −3.26 | |
a
Average channel intensity ratio of wounding-treated samples over control samples from two independent experiments.
b
W0.5 and W6 indicate 0.5 and 6 h after wounding.