Table 2.
Basic statistics of CpGcluster and CpGProD islands
| hg17 | mm7 | |||
| CpGcluster | CpGproD | CpGcluster | CpGproD | |
| Genome length (without N-runs, bp) | 2.85E + 09 | 2.85E + 09 | 2.51E + 09 | 2.51E + 09 |
| Total number of CpGs | 28,073,991 | 28,073,991 | 20,967,593 | 20,967,593 |
| CpG-dinucleotides in CpG-islands (%) | 4,489,575 (15.99) | 4,323,799 (15.40) | 2,708,986 (12.92) | 2,215,608 (10.57) |
| Number of islands predicted | 197,727 | 76,793 | 117,373 | 40,171 |
| *Island coverage (%) | 1.90 | 2.81 | 1.47 | 1.65 |
| Island length (bp): | ||||
| Average | 273.5 ± 246.7 | 1043.8 ± 761.7 | 314.0 ± 293.8 | 1030.3 ± 560.0 |
| Minimum | 8 | 500 | 8 | 500 |
| Maximum | 7,774 | 42,276 | 5,618 | 9,288 |
| Average island GC-content (%) | 63.76 ± 7.51 | 54.58 ± 6.12 | 61.58 ± 10.03 | 54.62 ± 5.17 |
| Average CpG O/E ratio | 0.855 ± 0.265 | 0.636 ± 0.089 | 0.956 ± 0.428 | 0.652 ± 0.103 |
| Average CpG-density | 0.087 ± 0.041 | 0.047 ± 0.016 | 0.097 ± 0.084 | 0.048 ± 0.015 |
*Percentage of the genome covered by the CpG-islands.
Basic statistics of the CpG-islands predicted by CpGcluster and CpGProD in the human (hg17) and mouse genomes (mm7).