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Bayesian MCMC estimates of JCV and human mtDNA evolutionary dynamics
| Genetic material analyzed | ML data set factors
|
||||||
|---|---|---|---|---|---|---|---|
| Clock | Sequence length (bp) | Isolation date range | Mean rate (subs/site/yr) | HPD of rate (subs/site/yr) | Mean MRCA (yr) | HPD of MRCA (yr) | |
| 158 JCV coding regions | Relaxed | 4,798 | 1970-2003 | 1.7 × 10−5 | 2.1 × 10−6, 3.1 × 10−5 | 1.3 × 103 | 3.1 × 102, 3.1 × 103 |
| 158 human mtDNA genomes (no D-loop) | Strict | 15,454 | NA | Set to 1.7 × 10−8 | NA | 1.4 × 105 | 1.0 × 105, 1.8 × 105 |
