Table 2.
Top biases for the the thirteen metazoan proteomes (*)
| Mammals | |||||||||||||||
| Hsap | Ptro | Mmus | Rnor | ||||||||||||
| {C} | 0.036 | {GP} | 0.042 | {C} | 0.039 | {C} | 0.039 | ||||||||
| {P} | 0.031 | {C} | 0.037 | {P} | 0.020 | {GP} | 0.023 | ||||||||
| {GP} | 0.024 | {P} | 0.020 | {GP} | 0.020 | {P} | 0.020 | ||||||||
| {Q} | 0.009 | {ED} | 0.009 | {Q} | 0.011 | {Q} | 0.013 | ||||||||
| {G} | 0.008 | {Q} | 0.009 | {ED} | 0.009 | {ED} | 0.009 | ||||||||
| {E} | 0.008 | {G} | 0.009 | {E} | 0.008 | {KE} | 0.006 | ||||||||
| {S} | 0.008 | {S} | 0.007 | {PQ} | 0.005 | {E} | 0.005 | ||||||||
| {ED} | 0.007 | {E} | 0.007 | {CG} | 0.005 | {RS} | 0.005 | ||||||||
| {PG} | 0.007 | {QP} | 0.007 | {PG} | 0.004 | {S} | 0.004 | ||||||||
| {QP} | 0.006 | {PG} | 0.006 | {G} | 0.004 | {PG} | 0.004 | ||||||||
| Total | 4903 | Total | 3812 | Total | 3721 | Total | 3169 | ||||||||
| Non-mammals | |||||||||||||||
| Ggal | Frub | Tnig | Drer | Agam | Amel | Dmel | Cele | ||||||||
| {C} | 0.056 | {HT} | 0.099 | {C} | 0.034 | {C} | 0.042 | {C} | 0.035 | {C} | 0.052 | {Q} | 0.070 | {GP} | 0.035 |
| {GP} | 0.048 | {CV} | 0.081 | {GP} | 0.032 | {GP} | 0.038 | {GP} | 0.014 | {GP} | 0.030 | {QH} | 0.055 | {C} | 0.030 |
| {P} | 0.019 | {GP} | 0.048 | {P} | 0.016 | {P} | 0.017 | {T} | 0.012 | {P} | 0.016 | {C} | 0.020 | {T} | 0.021 |
| {EKQL} | 0.008 | {C} | 0.046 | {CV} | 0.014 | {T} | 0.010 | {Q} | 0.012 | {F} | 0.010 | {T} | 0.014 | {Q} | 0.012 |
| {Q} | 0.007 | {P} | 0.016 | {HT} | 0.013 | {ED} | 0.010 | {QH} | 0.009 | {R} | 0.007 | {N} | 0.011 | {KED} | 0.010 |
| {S} | 0.006 | {Q} | 0.009 | {Q} | 0.007 | {G} | 0.008 | {G} | 0.009 | {G} | 0.007 | {H} | 0.009 | {QC} | 0.009 |
| {EKQ} | 0.006 | {S} | 0.009 | {PS} | 0.007 | {Q} | 0.007 | {RDE} | 0.007 | {FIY} | 0.007 | {S} | 0.007 | {ED} | 0.009 |
| {RS} | 0.005 | {CD} | 0.008 | {ED} | 0.007 | {S} | 0.007 | {PIE} | 0.007 | {CN} | 0.007 | {G} | 0.006 | {KE} | 0.008 |
| {QP} | 0.005 | {E} | 0.008 | {E} | 0.006 | {RS} | 0.005 | {P} | 0.005 | {EKAQ LRND} | 0.006 | {QPH} | 0.006 | {PG} | 0.007 |
| {EQKL} | 0.005 | {ED} | 0.007 | {PG} | 0.006 | {HC} | 0.005 | {RS} | 0.005 | {A} | 0.005 | {P} | 0.006 | {RS} | 0.007 |
| Total | 2743 | Total | 5639 | Total | 2609 | Total | 3669 | Total | 1304 | Total | 2340 | Total | 3394 | Total | 2295 |
(*) The proteomes are given an abbreviation derived from the Latin name of the organism, i.e., Hsap for human, Rnor for rat, Drer for zebrafish, etc. The Total Number of CB regions is listed at the bottom for each proteome. For each bias (denoted by a CB signature), the fraction of the total number of CB regions is given; the regions are listed in decreasing order of abundance.