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Times for all-against-all sequence comparisons of the ASTRAL SCOP PDB095 set.
| Method | Time |
| Paracel SW e-value | 3 hours * |
| Biofacet SW Z-score | multiple days |
| NCBI BLAST e-value | 15 minutes |
| FASTA e-value | 40 minutes |
| SSEARCH e-value | 5 hours, 49 minutes |
| ParAlign SW e-value | 47 minutes |
* estimation because of unavailability Paracel system
