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. 2006 Oct 18;7:261. doi: 10.1186/1471-2164-7-261

Table 1.

Intergenic sequences from tubulin tandem gene arrays in kinetoplastids

Species Tandem gene arrayb:
Monotypic: Alternating:
α-α β-β α-β β-α
size primers accessiona size primers accessiona Size primers accessiona size/bp primers accessiona
Genome Trypanosoma brucei X x 326 - Tb927.1.2340 631 - Tb927.1.2330
Trypanosoma congolense X x 357 - congo819f03.q1k 443 - congo819f03.q1k
Trypanosoma cruzi X x 679 - AF091836 932 - M97956
Trypanosoma vivax X x 488 - tviv1885f05.p1k 332 - tviv1885f05.p1k
Leishmania major 920 - LmjF13.0280 2253 - LmjF33.0792 x x
Leishmania infantum 958 - LinJ13.0260 2283 - contig4336 x x
Leishmania braziliensis 904 - - 1629 - - x x
PCR Trypanosoma cyclops X x 515 betaF/alphaR DQ450538 645 betaF/alphaR DQ450538
Trypanosoma grayi X x 521 betaF/alphaR DQ450539 683 betaF/alphaR DQ450539
Trypanosoma pestanai X x 611 senseα/antiβ DQ450540 x
Crithidia deanei X x 527 betaF/betaR DQ450532 x
Bodo saltans X x 608 senseα/antiβ DQ450531 x
Parabodo caudatus X x x 545 senseβ/antiα DQ450537
Neobodo designis X x 390 senseα/antiβ DQ450535 x
Herpetomonas megaseliae X x x 1222 senseβ/antiα DQ450536
Leishmania mexicana 917 senseα/antiα DQ450541 1975 senseβ/antiβ DQ450542 x x
Crithidia fasciculata 927 senseα/antiα DQ450533 1229 senseβ/antiβ DQ450534 x x

aAccession numbers given for completed or draft genome sequences correspond to identifier tags in genome sequence browsers [66], except for T. cruzi. Accession numbers given for PCR sequences and T. cruzi correspond to GenBank accession numbers. Contigs were manually assembled for L. braziliensis, therefore no identifiers are available.

b 'x' denotes an absence of any evidence for a given intergenic sequence, caused either by a failed reaction or a genuine absence (see text).