Table 1.
Species | Tandem gene arrayb: | ||||||||||||
Monotypic: | Alternating: | ||||||||||||
α-α | β-β | α-β | β-α | ||||||||||
size | primers | accessiona | size | primers | accessiona | Size | primers | accessiona | size/bp | primers | accessiona | ||
Genome | Trypanosoma brucei | X | x | 326 | - | Tb927.1.2340 | 631 | - | Tb927.1.2330 | ||||
Trypanosoma congolense | X | x | 357 | - | congo819f03.q1k | 443 | - | congo819f03.q1k | |||||
Trypanosoma cruzi | X | x | 679 | - | AF091836 | 932 | - | M97956 | |||||
Trypanosoma vivax | X | x | 488 | - | tviv1885f05.p1k | 332 | - | tviv1885f05.p1k | |||||
Leishmania major | 920 | - | LmjF13.0280 | 2253 | - | LmjF33.0792 | x | x | |||||
Leishmania infantum | 958 | - | LinJ13.0260 | 2283 | - | contig4336 | x | x | |||||
Leishmania braziliensis | 904 | - | - | 1629 | - | - | x | x | |||||
PCR | Trypanosoma cyclops | X | x | 515 | betaF/alphaR | DQ450538 | 645 | betaF/alphaR | DQ450538 | ||||
Trypanosoma grayi | X | x | 521 | betaF/alphaR | DQ450539 | 683 | betaF/alphaR | DQ450539 | |||||
Trypanosoma pestanai | X | x | 611 | senseα/antiβ | DQ450540 | x | |||||||
Crithidia deanei | X | x | 527 | betaF/betaR | DQ450532 | x | |||||||
Bodo saltans | X | x | 608 | senseα/antiβ | DQ450531 | x | |||||||
Parabodo caudatus | X | x | x | 545 | senseβ/antiα | DQ450537 | |||||||
Neobodo designis | X | x | 390 | senseα/antiβ | DQ450535 | x | |||||||
Herpetomonas megaseliae | X | x | x | 1222 | senseβ/antiα | DQ450536 | |||||||
Leishmania mexicana | 917 | senseα/antiα | DQ450541 | 1975 | senseβ/antiβ | DQ450542 | x | x | |||||
Crithidia fasciculata | 927 | senseα/antiα | DQ450533 | 1229 | senseβ/antiβ | DQ450534 | x | x |
aAccession numbers given for completed or draft genome sequences correspond to identifier tags in genome sequence browsers [66], except for T. cruzi. Accession numbers given for PCR sequences and T. cruzi correspond to GenBank accession numbers. Contigs were manually assembled for L. braziliensis, therefore no identifiers are available.
b 'x' denotes an absence of any evidence for a given intergenic sequence, caused either by a failed reaction or a genuine absence (see text).