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. 2003 Jun 15;31(12):3143–3156. doi: 10.1093/nar/gkg411

Table 1. Bacterial strains, plasmids and DNA fragments.

  Relevant characteristics Reference or source
Rhizobium    
8401 Rhizobium leguminosarum bv. viciae cured of its symbiotic plasmid, Strr (44)
Escherichia coli    
S17-1 294 recA, chrom, RP4 derivative (24)
Plasmids    
pKT230 IncQ broad-host-range plasmid; Strr, Kanr (45)
pIJ1518 1.8 kb BclI fragment with nodD in pKT230; Kanr (4)
pMP220 lacZ downstream of a multi-cloning site; IncP broad-host-range plasmid; Tcr (9)
pMP221 Opposite multi-cloning site in pMP220 Stored in this laboratory
pUW nodA promoter (–75 to +57) cloned into the EcoRI–PstI sites of pUC119 This study
pUO13 nodA promoter (–75 to +57) with the O13 D-half cloned into the EcoRI–PstI sites of pUC119 This study
pMP221O13 EcoRI–PstI fragment cloned from pUO13 into pMP221 This study
Fragments    
TnodboxT 5′-TTGAATATCCATTCCATAGATGATTGCCATCCAAACAATCAATTTTACCAATCTTTCGG-3′ This study
  3′-CTTATAGGTAAGGTATCTACTAACGGTAGGTTTGTTAGTTAAAATGGTTAGAAAGCCTT-5′  
TDhalfT 5′-TTGAATATCCATTCCATAGATGATTGCCATACTGACTGACTGACTGACTGACTGACTGA-3′ This study
  3′-CTTATAGGTAAGGTATCTACTAACGGTATGACTGACTGACTGACTGACTGACTGACTTT-5′  
TPhalfT 5′-TTTGCATGCATGCATGCATGCATGCATGATCCAAACAATCAATTTTACCAATCTTTCGG-3′ This study
  3′-ACGTACGTACGTACGTACGTACGTACTAGGTTTGTTAGTTAAAATGGTTAGAAAGCCTT-3′