Table 3.
ORESTES with matches to protein domains
| Profile ID | Domain description | Score | GenBank accession no. |
|---|---|---|---|
| d111_domain | D111 domain | 14.2158 | AI905887 |
| Brct_domain | BRCT domain | 8.8606 | AI902587 |
| atp_gtp_a2 | P loop nucleotide-binding motif | 8.6225 | AI902167 |
| spec_repeat | Spectrin repeat | 8.5467 | AI902512 |
| sbp_glur | Solute-binding protein/glutamate receptor domain | 8.1420 | AI903015 |
| palp_1 | Pyridoxal-phosphate-dependent enzyme Acyl-carrier phosphopantetheine | 7.2761 | AI908798 |
| acp_domain | BCL-2-like apoptosys inhibitor | 6.9307 | AI903039 |
| bcl2_family | SUR-2-type hidroxylase/desature | 6.8022 | AI903058 |
| sur2_domain | SEA module | 6.7457 | AI903214 |
| sea_domain | Phosphatidyl-inositol phospholipase | 6.4994 | AI905383 |
| pip1c_x_domain | X box | 6.4033 | AI908839 |
| sea_domain | SEA module | 6.3293 | AI910016 |
| tyr_phosphatase_2 | Tyrosine phosphatase domain | 6.2816 | AI909545 |
| pld_domain | Phospholipase D | 6.2544 | AI903067 |
| c_type_lectin_2 | C type lectin | 6.2340 | AI904349 |
| ibn_nt | Importing-β | 6.1850 | AI907745 |
| pas_repeat | PAS-associated domain | 6.1762 | AI903674 |
| acp_domain | Acyl-carrier phosphopantetheine | 6.1551 | AI903034 |
| btb | BTB-TTK domain | 6.1456 | AI909573 |
| cys_prot_calpain | Calpain-type cystein protease | 6.1452 | AI904349 |
| tyr_phosphatase_dual | Tyrosine phosphatase | 6.0742 | AI904256 |
| spec_repeat | Spectrin repeat | 6.0322 | AI906055 |
The list of sequences predicted to contain protein domains was generated by searching estscan-translated ORESTES against the profile library of the prosite database, including the prerelease profiles from ftp://ftp.isrec.isb-sib.ch/sib-isrec/profiles/. Note that the scores represent −Log10 per residue E values, meaning that a match with a score of 8, for example, is expected to occur about once in 108 residues.