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. 2006 Aug 18;34(17):4912–4924. doi: 10.1093/nar/gkl472

Table 3.

Bulge loop initiation enthalpy parametersa

Bulge length ΔHinitiationo (kcal/mol) SE (kcal/mol)
1 10.6 1.2
2 7.1 4.3
3 7.1 11.7
n ≥ 4 (7.1)

aNote that the nearest neighbor parameter for stacking of adjacent base pairs is added for bulges with 1 nt. For bulges with >1 nt, calculation of the stabilities of adjacent helices includes the terminal AU penalty terms for AU or GU pairs adjacent to the bulge.