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. 2006 Oct 26;34(20):5966–5973. doi: 10.1093/nar/gkl731

Figure 4.

Figure 4

The empirical probability density of alignment and compositional P-values from shuffled sequences. 10 000 shuffled mouse query sequences were compared using S-BLAST to shuffled human RefSeq (20) sequences from Build 35 of the human genome. For each query, the alignment P-value Pa of the best match to the database was found, and the compositional P-value Pc was then calculated for the database sequence involved.