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. 2006 Oct 19;34(20):5800–5814. doi: 10.1093/nar/gkl751

Figure 6.

Figure 6

Secondary structures of the bacterial (A) and archaeal (B) L10 binding sites on 23S rRNA. (A): RNA fragment from E.coli, nucleotide changes in T.thermophilus are indicated; numbering of the helixes is according to (29) and marked in blue; (B): RNA fragment from M.vannielii, nucleotide changes in M.jannaschii are indicated. The conserved core in helix 42, thought to be the essential element for binding of the stalk complex (51,52), is marked in red. The parts of the archaeal RNA fragment, which were deleted (I; II; III; II and III) are boxed in black. The 95 nt fragment, which was finally used for binding experiments is boxed in green.