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(A) Scatter plot of the RMSD of the final model (by TASSER) to native versus RMSD of the initial alignment (by PROSPECTOR_3) to native. The same aligned region is used in both the RMSD calculations. (B) Similar data as in A, but with the models from MODELLER. (Circle, triangle, square, downward triangle, diamond, and solid triangle correspond to data points for targets in the sequence identity range of 35–40%, 40–50%, 50–60%, 60–70%, 70–80%, and 80–90%, respectively.)
