Table 5.

Genes that were identified by SAM in both (T - N) and (CL - N) comparisons but not in (CL - T) comparisons; (T - N ∩ CL - N) – (T - N ∩ CL - N ∩ CL - T).

Breast		CNS		Colon		Ovary		Prostate		Renal
UP	DOWN	UP	DOWN	UP	DOWN	UP	DOWN	UP	DOWN	UP	DOWN
GALNS	APP	ACTB	ATP5O	ARD1A	ADH1B	MCM2	ACTG2		APOD		ADH1B
GP9	AQP1	CPSF1	COX7A1	ARPC1B	BRD2		AEBP1		CCND2		ALDH4A1
LCAT	ARHGEF6	DDX11	CTNNB1	BCAT1	C7		C7		CXCL12		ANPEP
RND2	ATP6V1B2	ECE1	GYPE	CCND1	CA2		CEBPD		KCNMB1		ASS
	BRD2	EEF1A1	ITGB7	CPNE1	CALCOCO2		CNN1		MATN2		ATP6V1B1
	CTNNB1	EEF1G	KIAA0513	CUL7	CASC3		DPYSL2		PTGDS		C7
	CXCL12	FRAP1	MEF2C	ERCC1	CES2		DUSP1		PTN		CLCNKB
	DUSP1	GNAI2	MRPS21	GPS1	CHGA		EGR1		SERPING1		ENG
	EGR1	GNB1	MYOM2	MDK	CLEC3B		FOS		SPARCL1		EPHX2
	EGR3	GNB2	PCP4	PDXK	CNN1		GYPC				FABP1
	IGFBP4	GPIAP1	PVALB	PEX6	CRYAB		IGFBP5				GATA3
	JUND	GPS1	S100A1	PHLDA2	CTNNB1		JUNB				GATM
	KHSRP	H3F3B	SEPP1	S100A11	CUGBP2		LMOD1				GPX3
	KIT	HNRPF	SERPINI1	TEAD4	DMD		LUM				GSTA2
	KRT15	KHDRBS1			DPYSL2		MYH11				HMGCS2
	KRT5	MAZ			FABP4		MYLK				HPD
	MXI1	NONO			FCGBP		NDN				KCNJ1
	MYH11	ODC1			FGFR2		NR4A1				MT1G
	NFIB	PCBP2			FHL1		PPAP2B				MT1X
	NSMAF	RAB7			GDI1		SEPP1				PAH
	PCBP1	RBM10			GPD1L		SERPINF1				PALM
	SERPINA3	RBM5			HMGCS2		SPARCL1				PCK2
	SNTB2	RHOB			HSD11B2		TNXB				PRODH2
	SOX9	SMARCA4			HSPA1A		ZBTB16				PTHR1
	SPARCL1	SRM			IL11RA		ZFP36				SERPINA5
	VWF	TRIM28			IL6R						TACSTD1
	ZFP36	TUBB			ITGA7						UGT2B7
		UFM1			ITPKB						UMOD
		YBX1			LMOD1
					LPL
					MAOA
					NFIB
					NR3C2
					PCK1
					PLN
					PPAP2B
					PPP1R1A
					PRKCB1
					SEPP1
					SLC26A3
					SMTN
					SPIB
					SRPX
					TACR2
					TGFBR3
					TPM1
					TPM2
					TSPAN7
					TUBA3
					ZBTB16