TABLE 1.
Genomic species and strains of Agrobacterium used in this study
| Strain | Other designation(s)a | Biological source, geographical origin, and other information | DNA-DNA hybridization results (reference)b |
|---|---|---|---|
| Genomic species G1c | |||
| TT111d | CFBP 5767, LMG 196 | Crown gall, United States | 10 |
| ATCC 4720 | CFBP 5493, LMG 182 | Black raspberry, Iowa | 29 |
| NCPPB 396 | CFBP 5765, LMG 176 | Dahlia sp., Germany | 10 |
| S377 | CFBP 5768, LMG 326 | Plant | 29 |
| S56 | CFBP 5491, LMG 321 | Plant | 29 |
| S4 | CFBP 5492, LMG 318 | Plant | 29 |
| CFBP 5622 | Solanum nigrum, root tissue commensal, LCSA,e France | This study | |
| CFBP 2517 | Hybrid poplar, Leuce section, gall, France | This study | |
| CFBP 5771 | Bulk soil, LCSA, France | This study | |
| CFBP 2712 | Prunes persica × Prunus amygdalus cv. GF677 gall, France | ND | |
| Genomic species G2 | |||
| CIP 497-74 | CFBP 5494, CFBP 2884 | Human blood, France | 29 |
| Bernaerts M2/1 | CFBP 5876, LMG 147 | Ditch water, Belgium | 29 |
| CIP 28-75 | CFBP 5495 | Human urine, France | 29 |
| CIP 43-76 | CFBP 5496 | Human urine, France | 29 |
| Genomic species G3 | |||
| CIP 107443 | CFBP 6623, CIP 493-74 | Antiseptic flask, France | 29 |
| CIP 107442 | CFBP 6624, CIP 111-78 | Human, France | 29 |
| Genomic species G4 (A. tumefaciens sensu stricto) | |||
| B6T | CFBP 2413T, LMG 187T | Apple seedling, Iowa; A. tumefaciens type strain | 29 |
| CIP 67-1 | CFBP 2413T, LMG 187T | Other designation for B6 | 29 |
| ATCC 4452 | CFBP 5766, LMG 181 | Rubus idaeus, Iowa | 10 |
| ATCC 4718 | CFBP 5764, LMG 139 | Soil, United States | 10 |
| Kerr 14 | CFBP 5761, LMG 15 | Soil around Prunus dulcis, South Australia | 10 |
| Hayward 0322 | CFBP 5770, LMG 1687 | Prunus persica stock gall, South Australia | 10 |
| ATCC 19358 | CFBP 5522, LMG 140 | Soil; A. radiobacter type strain | 29 |
| LMG 340 | CFBP 5769, ICPB TT11 | Librocedrus sp. gall, United States | 10 |
| LMG 62 | No information available | 10 | |
| CFBP 5621 | Lotus corniculata, root tissue commensal, LCSA, France | This study | |
| CFBP 5627 | Bulk soil, LCSA, France | This study | |
| CFBP 2514 | Vitis vinifera gall, Spain | ND | |
| Genomic species G5 | |||
| CIP 107444 | CFBP 6626, CIP 120-78 | Human cephalorachidian liquid, France | 29 |
| CIP 107445 | CFBP 6625, CIP 291-77 | Patient food, France | 29 |
| Genomic species G6 | |||
| NCPPB 925 | CFBP 5499, LMG 225 | Dahlia sp., South Africa | 29 |
| Zutra F/1 | CFBP 5877, LMG 296 | Dahlia sp., Israel | 29 |
| Genomic species G7 | |||
| Zutra 3/1 | CFBP 6999, LMG 298 | Malus sp., Israel | 29 |
| RV3 | CFBP 5500, LMG 317 | No information available | 29 |
| NCPPB 1641 | CFBP 5502, LMG 228 | Flacourtia indica, United Kingdom | 29 |
| Genomic species G8 | |||
| C58 | CFBP 1903, LMG 287 | Prunus sp. cv. Montmorency (cherry), New York | 9 |
| TT9 | CFBP 5504, LMG 64 | Likely hop, United States | 29 |
| T37 | CFBP 5503, LMG 332 | Juglans sp. gall, California | 29 |
| Mushin 6 | CFBP 6550, LMG 201 | Humulus lupulus gall, Victoria, Australia | 29 |
| LMG 75 | CFBP 6549 | Euonymus alata cv. Compacta gall, United States | ND |
| LMG 46 | CFBP 6554 | Rubus macropetalus, Oregon | ND |
| AW137 | LMG R-10181 | Transmitted by A. Willems, LMG | ND |
| J-07 | CFBP 5773 | Bulk soil, LCSA, France | This study |
| Genomic species G9 | |||
| Hayward 0363 | CFBP 5506, LMG 27 | John Innes potting soil, Australia | 29 |
| Hayward 0362 | CFBP 5507, LMG 26 | John Innes potting soil, Australia | 29 |
| Agrobacterium sp. strain NCPPB 1650 | CFBP 4470, LMG 230 | Rosa sp., South Africa | ND |
| A. larrymoorei AF 3.10T | CFBP 5473, LMG 21410 | Ficus benjamina; type strain | 3 |
| A. rubi LMG 17935T | CFBP 5509T | Rubus ursinus var. Loganobaccus, United States; type strain | 20 |
| A. vitis K309T | CFBP 5523T | Vitis vinifera; type strain | 27 |
| Rhizobium rhizogenes | |||
| LMG 150T | CFBP 2408T, CFBP 5520T | Apple tree; type strain | 29 |
| K84 | CFBP 1937, LMG 138 | Prunus persica, soil around gall, Australia | ND |
| CFBP 2519 | Hybrid poplar gall, Leuce section, France | ND |
a
CFBP, Collection Française de Bactéries Phytopathogènes, INRA, Angers, France; LMG, Laboratorium voor Microbiologie, Ghent University, Ghent, Belgium; CIP, Collection de l'Institut Pasteur.
b
Reference for strain assignment to a genomic species as determined by DNA-DNA hybridization. ND, DNA-DNA hybridization not done.
c
Genomic species G1 to G9 based on the nomenclature of Mougel et al. (24).
d
The first strain of each genomic species is the reference strain or the accepted type strain of the described species.
e
LCSA, maize field at La-Côte-Saint-André, Insère, France.