Table 4.

Mean end-to-end distance, $\overline{r}$, of FRET dye-pair and the associated variance σ for DNA containing two symmetrically distributed 1 bp melted bubbles separated by varying distances

Distributed bubble distance (bp)	$\overline{r}$(nm)	σ(nm)
0	5.80 ± 0.02	0.49 ± 0.02
4	5.57 ± 0.03	0.51 ± 0.03
6	5.58 ± 0.01	0.57 ± 0.01
8	5.28 ± 0.01	0.62 ± 0.01