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. 2006 Sep 25;34(18):5184–5193. doi: 10.1093/nar/gkl664

Figure 4.

Figure 4

Superposition of the upper (A) and lower (B) stems of the 10 structures obtained at even intervals by the 3–8 ns molecular dynamics trajectory. G, A, C and U residues in the GGAUA loop and putative internal loop region are indicated by blue, red yellow and green, respectively. The open arrow in panel A indicates the second G in the GGAUA loop of LINE36, which is the UnaL2p recognition site. The filled arrow in panel B indicates the probable location of the 3′-terminal repeat of the UnaL2 RNA.