TABLE 2.
Comparison of the hydrophobic domains of HCV and BVDV NS5B and PV 3A
| Strain | Hydrophobic domain of NS5B or 3Aa | EMBL accession no. |
|---|---|---|
| HCV 1a | RWFWFCLLLLAAGVGIYLLPNR | AF009606 |
| HCV 1b | RWFMWCLLLLSVGVGIYLLPNR | AJ238799 |
| HCV 2a | RLLLFGLLLLFVGVGLFLLPAR | AAY24373 |
| HCV 2b | RLLLLCLLLLSVGVGIFLLPAR | AAP55704 |
| HCV 3a | RYLLLCLLLLTVGVGIFLLPAR | AF046866 |
| HCV 3b | RHLLLCLLLLTVGVGIFLLPAR | BAA08372 |
| HCV 4a | RYLLLCLLILTVGCGIFLLPAR | CAA72338 |
| HCV 4b | RWFMWCLLLLSVGVGIYLLPNR | CAA43793 |
| HCV 5a | RNLLLCLLLLSVGVGIFLLPAR | CAA73640 |
| HCV 6a | RFLLLGLLLLTVGVGIFLLPAR | CAA72801 |
| HCV 6b | RMLLLCLLLLSVGVSIFLLPAR | BAA07103 |
| BVDV C | PIVNLLLRRLRVLLMAAVGASS | Q96662 |
| BVDV N | PIVNLLLRRLKILLMTAVGVSS | P19711 |
| PV1 (M) | AMTILQAVTTFAAVAGVVYVMY | NP740474 |
a
Conserved amino acids are in bold.