TABLE 1.
Charged cluster mutant | Primer sequence (5′→3′) | Restriction site introduced | Wild-type amino acid sequence | Mutant amino acid sequence |
---|---|---|---|---|
CL01 | GAACGAGACCCgCGAAGGCGgCACCTGGGTGGCC | HphIb | GDAFE | GAAFA |
CL02 | GGGACGATAAGcgcAATTgcCTGAAGCAGACCCTCG | MfeI | QRIRL | QAIAL |
CL03 | CGTCCCATCTACGTTGgccGGCGGGGcCGGGGAGGCG | NgoMIV | LRGGD | LAGGA |
CL04 | ACGTTGCGGGGCGGGGcCGGGGctGCaGGCCCCTACTCTCCC | PstI | DGEAG | AGAAG |
CL05 | GGGAAACGACgCGgCGGACCCGgCATGGCCATGAAAC | PleIb | DGSDE | AGSAA |
CL06 | GCCCAGTCGTTCATAAGCgctAgcACATACgCGATGGGAAACG | NheI | IEYVL | IAYAL |
CL07 | ATCGAGTATGTACTGgcGCTTATGAACGcgTGGGCCGAGGTCCCG | MluI | RLMND | ALMNA |
CL08 | CTGTCCCTCGGCGcgCTaGcCACCATCAAGGGG | NheI | GDLDT | GALAT |
CL09 | GGCGACCTGGcCACCATCgcGGGGCGGCTCG | MscI | LDTIK | LATIA |
CL10 | CCTGGACACCATCgcGGGagcGCTCGGCCTGG | AfeI | IKGRL | IAGAL |
CL11 | CCATCAAGGGGgcGCTCGGCCTGGcgGCCCGGCCGATG | HaeII | RLGLD | ALGLA |
CL12 | GCGGCTCGGCCTGGcTGCggcGCCGATGATGGCCAG | KasI | LDARP | LAAAP |
CL13 | R:ATCAGCTGCTTTGTGgcCATGCCtgcaGTGCAGCTCGCGTTT | PstI | VRMPR | VAMPA |
L:CAAACGCGAGCTGCACtgcaGGCATGgcCACAAAGCAGCTGA | ||||
CL14 | L:CAGGATCCGTCTCGTCgcTCCGGCtgCagCGGGGCCCATGAACCG | PstI | EDAGR | AAAGA |
R:CGGTTCATGGGCCCCGctGcaGCCGGAgcGACGAGACGGATCCTG | ||||
CL15 | R:CCCGAAGATGCCGGAgcGACtgcAgcGATCCTGTGCCGCGCCG | PstI | GRTGG | GATAA |
L:CGGCGCGGCACAGGATCgcTgcaGTCgcTCCGGCATCTTCGGG | ||||
CL16 | GCCGGACGGACGAGAgcGATCCTGTGCgcCGCCGCCGAGCAGGCT | BamHIb | RILCR | AILCA |
CL17 | R:GAGCAGGCTATTACCgcTgcCgcTgcAACCCGGCGGTCCCGG | HpyCH4IV | RRRRT | RRSRE |
L:CCGGGACCGCCGGGTTgcAgcGgcAgcGGTAATAGCCTGCTC | ||||
CL18 | R:CGTCGCCGCCGAACCgcGgcGTCCgctGcaGCGTACGGGGCCGAG | PstI | RRSRE | AASAA |
L:CCGGCCTCGGCCCCGTACGCtcGagcGGACgcCgcGGTTCGGCGGCG ACGGGTAA | ||||
CL19 | R:GCCGGAACGGGTTTCgcGGCtgcaGGGGcCGGTTTTGGCCCGCTC | PstI | RARGD | AAAGD |
L:GAGCGGGCCAAAACCGgCCCCtgcaGCCgcGAAACCCGTTCCGGC |
Lowercase letters indicate bases that differ from the wild-type HSV-1 sequence.
Restriction site was eliminated in the mutant.