TABLE 2.
Ensemble of structures used in the structure-based sequence analysis
| PDBa code | Protein | Organism |
|---|---|---|
| Prokaryote | ||
| 1P92 | H79A mutant of DtxR | C. diphtheria |
| 1bia, 1bib | Biotin holoenzyme synthetase/biorepressor (BirA) and complex | E. coli |
| 1bxy | Ribosomal protein L30 | Thermus thermophilus |
| 1ee8 | Mutm (Fpg) protein | T. thermophilus Hb8 |
| 1h9j | Molybdate-binding protein (Modg) | Azotobacter vinelandii |
| Eukaryote | ||
| 1abo, 1bbz | Abl tyrosine kinase and complex with a designed high-affinity peptide ligand | Mus musculus |
| 1cka | SH3 domain of c-Crk | M. musculus |
| 1fmk | Tyrosine-protein kinase c-Src | Human |
| 1gri | Growth factor-bound protein 2 | Human |
| 1jo8 | Actin binding protein Abp1 | Saccharomyces cerevisiae |
| 1lck | Sh3 domain of P56-Lck tyrosine kinase | Human |
| 1ycs | P53-53Bp2 complex | Human |
a
PDB, Protein Data Bank.