TABLE 3.
Parameter | Result at VBS of:
|
||||
---|---|---|---|---|---|
0.125 | 0.500 | 0.750 | 0.925a | 1.250 | |
Match similarity percentage defining dendrogram group | 7 | 44 | 66 | 74 | 73 |
Within dendrogram group | |||||
Total no. of isolatesb | 59 | 55 | 37 | 31 | 43 |
No. of VSG isolatesc | 26 | 26 | 26 | 26 | 26 |
No. of dissimilar isolates (non-VSG) | 33 | 29 | 11 | 5 | 17 |
% Sensitivityc | 100 | 100 | 100 | 100 | 100 |
% Specificityd | 6 | 17 | 31 | 86 | 49 |
Optimum VBS setting for E. faecium PFGE library.
Excludes reference E. faecium isolate.
By definition, the dendrogram group included all VSG isolates.
Specificity = [true negatives/(false positives + true negatives) × 100], where true negatives are non-VSG isolates located outside of the dendrogram group.